K34115

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34115

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased width (PATO:0000600)
    (Cauline leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34115

Determination of introduced cDNA(s)

  • J033043N20 - Rice Full-length cDNAs - Original: J033043N20

    full reading [+] show sequence

    Nucleotide sequence: J033043N20 - full reading 
    GCCCGCACGC ACGCACGCAC CTACCCTCCT CCGCCATCGA TCGTGCTCCG 
    ATCTGCGCCG CCGAGCCGGA CCTCCGCGCG GCGACGGCGG CGGCTTTCCG 
    GCCGGCGAGA GGGCCCTCGT GGGCGGCACG TCGTGGACCA CGGCCCCCGC 
    CCAGCGTTAG CCCCTTCCCC CCTGCGCTCG CTGGGTCCTT TGCTCGATCG 
    CTTCTCGATT CCCCGGGTCG CCTGCGTCGA TCTCCATCCC GCGGGGACGA 
    GCAGCTGCGC CGGCATCCGC TGCTTCCGAC GCATCCTCGC TTCGCTGGAA 
    AATTTGGGAG ATATGTGTTT GTCATGCTCA AAATGAGGTG GTAAGGGGAT 
    AATCTACATG CAATGCTGGG TGGTAAAAAG GTTCACTCTA GGAGAGATTG 
    GTTTAAACCA TTGCTTCAAT GAACATCATA CTAGAACTCA ACCATCTCAA 
    GCAGGTCAGC TTGCCGACGC GGCCTGTCGT TTGCAAAGGC CTTTTTATAG 
    TGATTGCGCT TATTGTGCTG AGGGCAATCG TATCCCCGTT TCTCGCCGTT 
    AACCCGTCCG AGAAGGAGGG TTTTTACGAT CCGACAGCCG ATTTGCTGCC 
    TGGGATTAGG CGAGGCAAGT TCATTGAGGT TCCACAGATT ATATGGGGAT 
    TGAACAATCA GAAGATTGCG TTTGCCAGGG CGTGCTTGAC TGCGAGATTC 
    CTGAACCGGT CTCTGCTCAT GCCTAGTTTG AGTGCTTCGC TTTTCTACAA 
    AGAGGTTGAC TTGCTGCGAC CAATCACTTT CGACAAGGTG TTTGACTTTA 
    CCAAGTTCAA CGCCCGTTGC CAGGGGTTCG TAAGGTTAGC TCGCTATTCA 
    GAAGTTTCTA ATCAAACCAA GCCTTTCAAA CTCCAAAAGG GAAGTGGTAG 
    GAGGTGGACC GTGGAGAAAG ACTTGGATCA GCTACTACAG TACAGAAGGG 
    GTGAGGCAGA TGACTCTGAA GTCATTGAAA TCATCGGGAA ACATCCATTT 
    TTGTGGCCTG ATCACTGGCC AGTGAAAGAC TATGCCAGAA TTTTCGATTG 
    CCTTGCGTTA GTTCCGGAGA TAGAAACTGA AGTGGTTAAG GCCATATCCA 
    AGATTAGAGA GGCAGGCATA AAAGCAAGAC ATGAGGCTGG TATTTCTCAT 
    AATAAGCACG TGAAAGATGG TACAATGAAT CCACCAGTGC CATACATTGC 
    CGTCCACATG AGAATAGAAA AGGATTGGAT GATCCATTGC AAGAAATGGG 
    AGCAGCGTTC CAATTCAAAG GAAATTTGCA GCAGTAAAGA AGAGATCATT 
    CATAAGGTCT CACAGATCAC TGATCTACGT AGGCCAGTTG TGGTTTATCT 
    TGCAGTAGCT GACAGCCTTC TAGAAGATGA TTCAATAACT AGCGGTTGGA 
    GGGTGGGTAT GGTTGCTTTT GAGAAGAAGA GACTTGGAGT TACTGACATC 
    TACAATAGGC AACCTTATCT TATAAAGTCC GCTATTGACT TTGAGGTATG 
    TGCGAGAGCG GATGTGTTTG TAGGCAATAG CTTCTCAACA TTTTCCAACC 
    TTGTGGTGCT GTCAAGAACA CAAAGGCTAT ATAACATGGG AGAGGCAAGC 
    TCATGTGGAG AGAATGTCGG GCTTTCATCC TATGCCTACA ATGTTATTGG 
    AGACGATGGC GGGCCACAGA GATGGATGAC AGATATGTCA GACACAAGCC 
    TCCAAAACTT GAGTTACGGA ACGAACAATA TCTCATGCCA CTGACTTATG 
    ACATAAAACA CTTGACTGAA CACGATCACA CACACAAGGA TAATTCTTGG 
    GAGAATTTTA GCTACAAACA GAGGAACATG TTAGAAGGTT GATATTGGCT 
    GCCACACTTG AGAGAGACTT TGGCCAAGAA TTGTCTGCAG ACCTTTGTGA 
    GTGTATACAA AAACTGTTCT CTGAAGAACA TTGACTTGTA TTGAACAGTC 
    TTTAGTTTGT AAAGTTAAAT GTTGTGTGTT ACTTTGTCTT CCTCCGTAAC 
    TTTTAATGTT ATGGTTTCAA AAGAGCAGCT TCATACTG

    Gene models with high sequence identity

    1. AT3G05320.1 [+] show detail - O-fucosyltransferase family protein
      E-value: 2e-130; Score: 463.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G05320.1

    Model type
    Protein coding
    Short Description
    O-fucosyltransferase family protein
    Computational Description
    O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J013123N04 - Rice Full-length cDNAs - Original: J013123N04

    full reading [+] show sequence

    Nucleotide sequence: J013123N04 - full reading 
    GGCACTCTTC TTGTCTCGTT CTACTCTCAC ACACAAAAGT TCGCTAGTAA 
    GTTACTTCCA AAAAAATTAA AACGATTTAT AACATCAACC GGAGTAGTAC 
    GTATTTGCAA ATTGCGGGCA TGAGCACCTT CAAGCATGGC CGCAGCAACG 
    ACGAGGCAGG GAACAATCAA GAAGTCACAA GGATGACATA CAAACGTTCC 
    AGTAAACAAG TCACATCTGC AACTGGATCG CAACAACCGT CTGTCAGCGA 
    ACCACCCGAA GGCACAAGGA TGACATACAG ACGTTCCAGT AAACAAGGCA 
    CATCTGCCGC TGGATCGCAA CAACCGTCTG TCAGCGAACC ACCCGCTGAT 
    CGGAGAATGA TATGGAGCAA GCAATCCAGG CGGTAAACAC AATCGCGTAC 
    TTCCCCGGCC CATGATAAAT ACATAGCGCG TGAGCAGCGG AAGCATGCAT 
    AGAAGATATT CATCGGATCG AAGATGGCGT TCAGCTATAT TGTAATAAGG 
    AACATATAAG AATCCAGCCA TACTTCCCGG CGCACCATCT CATACATGTG 
    TGTATAGCAT ACGTACGTGC GCGCGTATAA ATATCCATAC ACAACCACAT 
    TGCCGGTGTG GCAGGTAATC ACTAGTTCGT ATACTCGTAC ACATGTACTC 
    GTGGGCGTAC GCACTATACT ATTAAATGTA TATGCAATAC TGTTAAATGT 
    ATGAGTTGCA ATGTAAGCAG TGCTTGTATT ATCATCTATA GTTATTTGTG 
    TACTCGGGCA GTTTAATACA AGCACTGCTA TTTATGATAA TACAGAAATA 
    ATAAAATACA AAAGTTTATT

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >