K34117

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34117

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34117

Determination of introduced cDNA(s)

  • J033105G04 - Rice Full-length cDNAs - Original: J033105G04

    full reading [+] show sequence

    Nucleotide sequence: J033105G04 - full reading
    ATTATTTATC TACATCTCTG TGGCAGATGC GATATTTGCT CCAAAGGTGG 
    AGCGAATGTC GTACGCTGCC TCGCGCACCC CTCGGCCAAA TAAGAGCGGC
    GGGCTGAGGG AAGATGTCGT TGATGGAGTT GATAGAGTTG CTAAGGGTGG
    GTGAACACCC GAGGCGGCTC ACCCCTGGCT CTCTCTCACT CCCTACCGAG
    GGACTGCCCA TGGCGCAAAG GGGCACCCCA TGTGGCGGCT CAACCTTGGC
    TTGCTCGCGC TTCCCGCCGA GGGATTGCCC ATGGCGCAAA GGGGCACCCA
    TGGCGGCTGA TTTGTTGCTC TGCATCCAAT CCCTGGAGAA GGCTCCTCAC
    ATGGATGGTG GGCCTCTTCT GGGGCCTGGC CATGGAGGTC GCACCGTCCA
    TAGGACCTGC GGGCAGCTGC TGGAGGGGCT TCGCACCCAG GCTGTCAACG
    TCCATACATA GGACCTGGAC CTGCGGGCAG CTGCTGAAGG GGTCCTGTGG
    ATGAACGATC CATGGTTGAG CGAGGCTGCC TCCAGGGATG CTGTTAGAGC
    CTTTTCTACT TCACCTTGCG CATGCAAGTC AACACATCTT GGATGCACTT
    TCTTTTATAC AACGTGCTGG ATTCTCAAGT CCAACGCCAA TCCAAGCTCA
    GTCATGGCCA ATTGCCTTGC AGTGTCAAGA TGTTGTAGCT ATTGCAAAGA
    CAGGATCTGG AAAAACTCTT GGGTATCTAC TTCCTGGATT TATGCATATT
    AAACGCTTGC AAAACAACCC AAGGTCTGGT CCAACAGTGC TAGTTTTGGC
    ACCGACAAGG GAGCTTGCAA CTCAGATTTT GGAAGAAGCT GTGAAATTTG
    GCAGATCATC AAGAATTTCT TCCACGTGTC TATATGGTGG TGCTCCAAAA
    GGCCCCCAGC TAAGAGATTT GGATAGAGGG GTCGATGTCG TTGTTGCTAC
    ACCAGGAAGG TTGAATGACA TCCTAGAAAT GCGAAGGATA AGCCTTAAGC
    AAGTGTCGTA CCTTGTTCTA GATGAAGCTG ACCGTATGTT GGACATGGGA
    TTTGAACCAC AAATTCGGAA GATAGTGAAA GAAATTCCTC CTCGTCGGCA
    AACCCTCATG TACACTGCTA CTTGGCCTAA GGAAGTCCGA CGAATTGCAG
    AGGATCTTCT TGTTCACCCT GTCCAGGTGA CCATTGGAAG TGTTGATGAG
    CTTGTTGCTA ATAGTGCTAT TACTCAGAAT GTGGAGCTGA TCACACCGTC
    CGAAAAGCTT CGCCGTCTGG AGCAAATTTT GCGATCCCAG GATTCAGGTT
    CGAAGGTACT AATATTCTGT ACCACTAAGA GAATGTGCGA CCAACTTGCA
    AGGACACTTA CTAGGCAATT TGGAGCTTCT GCCATTCATG GTGATAAGTC
    CCAAAGTGAA AGAGAGAAGG TCCTGAGCCA TTTTAGATCT GGGCGATCTC
    CTATTTTGGT TGCAACAGAT GTTGCTGCAC GAGGCTTAGA CATCAAAGAT
    ATCAGGGTTG TGATCAATTA TGATTTCCCC ACTGGCATTG AAGATTATGT
    TCACCGGATT GGCAGGACTG GAAGGGCTGG TGCCACTGGT GTGGCCTATA
    CGTTTTTCTG TGACCAGGAT TCAAAATATG CTGCTGATCT TATTAAAACT
    CTGGAAGGCG CAAACCAACG TGTGCCTCGT GACTTGGCGG ACATGGCCTC
    TCGGGGTGGG CGTGGTGGTA GGAAGCGTAA CCGGTGGGCA ACCCGCTCTG
    ATAGGGGTGG TTCGCATTCT GAACTGGATT CTAGGTATGG TGGAAGAGAT
    GGTCTGTCAG GGTCTTCTGG CAGATTGGAT AGTAGTCGCA GTAGTCGCAG
    GCATGACTAT GGTGATGATG GACGGTCTCG CAGGTCTGGG AGAGGTCGCA
    GTAGGAGCCG TAGCAGAAGT GACAGTGATA GGTATAGCCG AAGTCCTAAG
    AGGTCACGCC GTCATAGCCG TAGCAGGACC AGGAGTCGGA GCCGAAGCAG
    GAGCAGGAGC TACACTAGGA ACCGTCGTGC TAGCCGCAGC AGGAGCCGTA
    GCCCTGGTGC TAGCCGTAGG CATGAAAGAA GCGCTACTGG CTCTGGGTCT
    GCACTGCCAG ACTCTGGGCA CGGTGAGCGC AAAAGAACAC CAGAAGCTGA
    CCCATCAAGA AACCATACAA ACCACTCAGA CCCGAAAGAT GACCGACACC
    CAGAGGATGG GAAGGTGGGA AAGGTTGATC TCGATCGGTC GCCTACTCCA
    CAAGACAAGT CTGGCCCATA TAGTCCTGCT TACAATGGAA AAACCAGTCG
    CTCAGTGAGC CCTGGTAATC AGGTGGAAGG AAACAACAAA GCTGCGGAGG
    TTTCTAAGAA TCCTGATCCT TCATCGCCAC CCCATCATGG TAAGACCAGG
    GAGGACGAAG AGGAAGGTAT GATAGATGAA GATGGAGAGA TAGCTGATGA
    TCCTCGGGCA AATGCAACCG TGCAGAATGG CGGTGATAAT TGACTCTTTG
    GTCCCAAAAG AATTTAACAA ACTGCTGAGC AGCCACTACA GATGATCTGC
    GTGACAAAGC TCAAAATGTT AAAAATTGTC TGAAGCTGTC TTTTCGTAGT
    CAAAACTTAA GTTATGAAAC TATCCGTGTC GTAGAGAGCT GGAGATTGTT
    TTGTGCCTGA GTTGTCTTAT AACATTATAT ACTTTGTAGA CCCTGTCGAA
    GTAGATCATG TGAAGTGAAG TTGGTAGCTC TGTTATTTGT GAACC

    Gene models with high sequence identity

    1. AT3G01540.4 [+] show detail - DEAD box RNA helicase 1
      E-value: 7e-157; Score: 551.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 1.8e-61
    superfamily P-loop containing nucleoside triphosphate hyd 1.5e-49
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 30.346
    ProfileScan DNA/RNA helicase, C-terminal 25.696
    ProfileScan RNA helicase, DEAD-box type, Q motif 7.251
    PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0
    HMMSmart DEAD-like helicase, N-terminal 2.1e-63
    HMMSmart DNA/RNA helicase, C-terminal 8.4e-35
    Gene3D no description 3.4e-64
    Gene3D no description 7.5e-48
    HMMPanther ATP-DEPENDENT RNA HELICASE DBP3 (YEAST)-RELAT 2.5e-225
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 2.5e-225
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 6.2e-50
    HMMPfam DNA/RNA helicase, C-terminal 4.7e-27

    See the detailed result >

    AT3G01540.4

    Model type
    Protein coding
    Short Description
    DEAD box RNA helicase 1
    Curator Summary
    RNA HELICASE DRH1
    Computational Description
    DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR