K34125

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34125

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34125

Determination of introduced cDNA(s)

  • J033023H11 - Rice Full-length cDNAs - Original: J033023H11

    full reading [+] show sequence

    Nucleotide sequence: J033023H11 - full reading 
    GGCGCGGCCG CGCCGCAGGC CGACGAGGGA TAACCTGGTG CCGATACGCG 
    TCGACGTCGA GGTGGACGGC CAGCGCTACA GGGACGCCTT CACCTGGAAC 
    CCATGCGACC CCGACTCGGA GATCATAAGC TTCGCGAAGA GGACGGCCAA 
    GGACCTCAAG CTGCCGGCCA ACTTCGTCCC CCAGATGCTC CACTCCATCC 
    AGGGGCAACT GACCGAGTTC CGTTCCTACG AGGGAGAGGA GATGCAGATC 
    AGGGAGAAGA TTGTGCCCCT CAAGATTGAC CTCCGGATAA ACAATACTGT 
    AATCAGAGAT CAGTTCTTGT GGGATATAGG CAACCTGGAT AGTGATCCTG 
    AGGAATTTGC AAGGACGCTA TGTGACGATT TGAACATTAC AGATCCTGAA 
    GTTGGGCCTG CAATAGCTGT CTCCATCCGC GAGCAGCTTT ATGAGATTGC 
    TAGTCAAAGT GTTTCTGCTA TGAGGGAAGC AGCTAGAGTT TCAAAGAAGG 
    GGAGGCGAGC ACCAGAATTT GCTTCAAATA GTAAAGCCAT GAACAATTCA 
    CTAGATCTAT TCAAGTATTT TGGCAGCAAA GGGAGTGTCG TTCGGAAAAG 
    GAAGGAATGG TACTTGTATG AGCCTGTTGT AGATGTCATA ACTAATGAGG 
    AAGTTGGAGT AACTGATGCA ACAGAGGAGA TTAACTCCAG GAATGCATGA 
    GCTGAAGCTG TAAACTGTAC CGCATTTGAT GATCCTGACG TGTTGAAAAG 
    AAGGATGAGA GCCTCCAACC CATGTTACAC CAATGCTGTT TGCAAAGCTT 
    TCTGGTTGTG ACTGCAGACC TCAGGAAAGA AGCCATTTCA ATGTTTGTGT 
    TTGGAAGGGA GGGCGAGCAT TAGGAGCATT AGGTACCTGG CTAGGTTAGC 
    TCTGTTCTGT AGATGTGTAA TGTGTTGTAC TCATAAAAAA ACTGCATGGA 
    AGCCATGGAA TGTGACCTAC CTGTATGGAG CTTGCCCTTC AGTTTGCTAT 
    TGTGTCGACC ATGTTTTGGG CTTGTGATGT GTTTATGTTT TGGAAGAAGT 
    GTTTTTTAGG TCGTCAGAGT TTAGGCCTAC TAATTAAGCC TTGGACTTTT 
    CGC

    Gene models with high sequence identity

    1. AT3G17590.2 [+] show detail - transcription regulatory protein SNF5, putative (BSH)
      E-value: 6e-80; Score: 294.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SNF5/SMARCB1/INI1 3.39999972437687e-29
    HMMPfam SNF5/SMARCB1/INI1 1.9e-10
    HMMPfam SNF5/SMARCB1/INI1 4.40000000000001e-14

    See the detailed result >

    AT3G17590.2

    Model type
    Protein coding
    Short Description
    transcription regulatory protein SNF5, putative (BSH)
    Curator Summary
    Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes.
    Computational Description
    BUSHY GROWTH (BSH); CONTAINS InterPro DOMAIN/s: SNF5/SMARCB1/INI1 (InterPro:IPR006939).
    Link
    InterPro Scan - TAIR