K34131

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34131

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34131

Determination of introduced cDNA(s)

  • J013133M15 - Rice Full-length cDNAs - Original: J013133M15

    full reading [+] show sequence

    Nucleotide sequence: J013133M15 - full reading 
    GCGAAAGCCC AGCGAGCGAC GGGGAGAGAT CGAGCCGAGC ACCGGCGAGG 
    AGGGATCGGC GATGATGGAC GGCGGGAGGC GGTGGCAGTC GCCCGCCGCG 
    GCGGCGGCGG CGGAGGGGGA GGACGCGGCG GGCGGCTACG GCGTCGGCGG 
    CGCGGGGGGG CCCTCGAGGC GGCCTCCCCG TCGCGGGCTG AACCGCGCGT 
    CGCCCTACGG GACGGCCGCC CCCCGCCGGT TGCTCCCCAC GCTGCCCGTG 
    GCCTCCAGGA TCTTCCCCTC CGTGGCCCAA GACCACGCCG CCGCCGCCGC 
    CGCCGCCTCC GACGATAATC AAATGGCCTG GCGTGAATCG CTGGAAGTAA 
    CCAATGAAAC ACATAGGCAT TCTATAGAAT GGAACACCAA TTCTACAGCC 
    CTGGATAATA AAGCCAGCCT GCTCCAGGAA GGTGATTGTA GAAATCAAAA 
    CGATGGCAGC GGTCTCGCTG AAATTGAGAA TATCATCAAA CAGAAACATT 
    TTTCTAGGGA TGAAACAGAA CGCCTTATAG AGATTATGCG CTCAAGGACT 
    CCTGATCATT TTAATGAATA TCAGAGAGTT CCAAGGTCTT CCACTAAAGG 
    TTTCGAAGCC ATTCCGTTTT CAGACAGATG GTCCACTCCT GCAAAAGAGA 
    TTGATGTTCG ATCACCTTGT GGGACTGAAG TCTTTGTACC ATCAAATGTG 
    CTTGATGTTG CCTCATCACC AATTGAACTT GCAAAAGCCT ATATGGAAGC 
    ACAGACCTCA GCATCTGTAC AAGAGTCTCA AAAGAGGAAA TTCAGAGCTT 
    TGAGTCATGG AGTTGAGGTA GAGAATTCAT CCTCAAAGGT TTTCCCTAAA 
    ATAGCTACAG ATTCTCCTGT ATGCTGGCCA GGATCTGTTG TCCGAAACTA 
    TCCGAATTAT CTTACACCAC AGAGCAATAA AGGAAGAACT CTGCCTCCAA 
    CTTCCTCTCG CACAACTTAT ATTGGCTCAG TTTTCCCAAG ATCTAACAAG 
    TACACAGGAT CCCGTGATGC CTATAATAAC TCATCTGGAA AGCCACAATT 
    TTCATCTCCT TTCCCTGTTG GAAGTAAGGC AATATTTGAG GATAAAACAG 
    CACCTCTTGG TGCTGTTCTT GGGGCGCAAC CGTCAACAAC ATATTCCAAA 
    GAAGCATATG GAGATACTGT TGGTGCAACT ACTCCCTTAT TTGCAAAGAA 
    ATGTTCTGCT TCTAAGAAGA ATGATGGATC CGCCCTTCAA GGACATCATG 
    GCGAAGGCAC CACTGAAAGT GGTTCATCGC TCGGGTTTGT TTCAATGGTA 
    GACAATATGC CCCATTCCAA ATCTGCGGCT TTATCTGTTC ATCCCAAGTC 
    AAGC

    Gene models with high sequence identity

    1. AT5G20200.1 [+] show detail - nucleoporin-related
      E-value: 3e-08; Score: 57.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G20200.1

    Model type
    Protein coding
    Short Description
    nucleoporin-related
    Computational Description
    nucleoporin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10650.1); Has 1474 Blast hits to 595 proteins in 170 species: Archae - 0; Bacteria - 165; Metazoa - 255; Fungi - 183; Plants - 74; Viruses - 0; Other Eukaryotes - 797 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR