K34138

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34138

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34138

Determination of introduced cDNA(s)

  • J013093I07 - Rice Full-length cDNAs - Original: J013093I07

    full reading [+] show sequence

    Nucleotide sequence: J013093I07 - full reading
    GACGGGCGAG ACCAGTAGTA AAGCTAAAGG CGCAAGGATT CCTCCGGGAA 
    AAACCCTACC ACCCGAATCC ACGCCGCCGC CGCCGTCGCC GCCGCGCTCT
    CCTCCGGCGA GAGCTCAGGG GGATTCGATC GCGACCGGCG GAGGAGGTGA
    GGTGAGGTGA GGCTTGGCGG GCGGCAACCA TGGCGGACGA GAAGCACGCG
    GAGAAGCGGG AGGAGGTCTC CGAGCTTACT CCTTTTGACC CAACCAAGAA
    GAAGAAAAAG AAGAAGGTTG TTATCCAAGA TCCTTCTGAT GAGGTGGACA
    AGCTGGCAGA GAAGACAGAA AACCTGACAG TCACAGAGCC TGGTGAGCTC
    AACTTCACTG GGATGAAAAA GAAGAAGAAG AAACCTGTGG ATCTTGATTT
    GTCTATTAAT GACATTGGTG ATGGGGAGGA CATTTTAGAT GACCAAGTTG
    TAGAGGAGGA AGAAGGGGAA GGAATTGTGC TTGGAGGTGC CCCTAGGTAC
    CCGTGGGAGG GAACTGATAG GGACTACAAT TATGATGAGC TTCTGGGCAG
    AGTGTTCAAT ATTCTGCGTG AAAACAATCC AGATCTTGCT GGAGACAGAC
    GCAGAACTGT CATGAGGCCG CCACAGGTTC TTCGAGAGGG CACGAAGAAG
    ACAGTTTTTG TGAATTTTAT GGACTTGTGC AAAACGATGC ATAGGCAACC
    TGAGCATGTG ATGATGTTTT TGCTTGCTAA AATGGGGACA AGTGGATCAC
    TTGATGGGCA GCAAAGGTTG GTGATCAAAG GAAGATTTGC TCCGAAAAAC
    TTCGAAGCAA TCCTGCGGAG ATATATCAAT GAGTACGTCA TTTGCAATGG
    TTGCAAAAGC CCTGATACCA TTCTATCCAA GGAAAATCGT CTGTTCTTCC
    TTCGCTGCGA ACAGTGTGGA TCGTCGAGGT CTGTTGCTCC AATCAAGGCT
    GGATTTGTCG CACAAGTTGG TCGGCGGAAG GCCTGAACAT AAGTCGAAGC
    TTTGGATTTG TCTATTCAGT GAGCTGCTAT ATTGTGTGAG AAATGATTTT
    GCTCTATCTT GTACTCTTGT GTGGCCAGTT TTGGACCTAG TTTTGGTCAT
    GTAAATGCCG ATGGCATTTA GTCTATCATA GGGTGATTTT GACCGCGAAT
    GCAACAACAC GACCAAGCAA ACTAGGTTGT GTGTTGTGAA CTTGTGATTG
    AAATTGGGTA TCAGTTTCAG GGTCTGAGCA AATGGATCAT ATCTCCTGGG
    TAGATTAGCT CCGGAAGTGC

    Gene models with high sequence identity

    1. AT5G20920.3 [+] show detail - eukaryotic translation initiation factor 2 beta subunit
      E-value: 5e-94; Score: 341.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Translation initiation factor IF2/IF5 6.3e-48
    HMMSmart Translation initiation factor IF2/IF5 3.7e-68
    superfamily Translation initiation factor IF2/IF5, N-terminal 7.5e-38
    superfamily Translation initiation factor IF2/IF5, zinc-binding 1.2e-11
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 8.8e-97

    See the detailed result >

    AT5G20920.3

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor 2 beta subunit
    Curator Summary
    protein synthesis initiation factor eIF2 beta
    Computational Description
    eukaryotic translation initiation factor 2 beta subunit (EIF2 BETA); FUNCTIONS IN: protein binding, translation initiation factor activity; INVOLVED IN: translational initiation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT3G07920.1); Has 1323 Blast hits to 1320 proteins in 358 species: Archae - 271; Bacteria - 0; Metazoa - 350; Fungi - 277; Plants - 186; Viruses - 4; Other Eukaryotes - 235 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR