K34146

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34146

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34146

Determination of introduced cDNA(s)

  • J013164K10 - Rice Full-length cDNAs - Original: J013164K10

    full reading [+] show sequence

    Nucleotide sequence: J013164K10 - full reading 
    GATCGCGGAG TTGACCCGTA TTGCTGCAGG CAGCTGCTGC TTTTCTTGCG 
    GCAACCGGAG CTGGTGCTGG CCTCGCCAGG TTCAGGTTAA TGGTCAACCA 
    CCACCACCAC TAGTTGCGCT ACTGAGACAG AGCAATGGAG GAGGGGGCGA 
    AGATCGGGAG GGAGCACGAG CAGCAGCAGC AGCAGCACGG GAGGGTGAAC 
    GGTAGCGGGA GGGTCGCGGC CGTCGGTGGC GGCAGCGGCG GTGGCGGGGA 
    CGAGATTGAG ATTGAGGTCG CCGCAGCCGC AGGGGCTTCG CCGTCGCGGC 
    AACACGGCGG TCTGCACGGC GATGTCCAGG CACCCACTTG GAAGAGATTT 
    CTTGCACATG TTGGTCCTGG ATTTGTTATC TCCATCGCAT ACCTTGATCC 
    TAGTAACTTG CAGACTGATT TGGTAGCTGG ATCCAGCCAC AGATATTCGT 
    TGCTATGGGT ACTCCTATTT GGGTTCATAT TTGTGTTGAC TGTACAATCA 
    TTGGCAGCAA ATTTGGGTAT CATTACAGGA AGGCACCTCG CTGAGTTGTG 
    CATGGGTGAA TATCCAAAGT ATGTCAAGTA CTGCCTATGG TTACTAGCAG 
    AGCTTGGTGT TATTGCTGCC ACTATACCAG GAGTTTTAGG AACTGCTTTA 
    GCCTACAACA TGCTACTCCA CATCCCTTTC TGGGCCGGTG TCCTAGCATG 
    TGGGGCATGC ACTTTCCTAA TTCTCGGGTT ACAAGGATAT GGGGTAAGAA 
    TTTTTCTCTG CTTATAAAAT AAAAAAGGGT AAATTACACT AGCGGTCCTT 
    AAACTTGTAA CGAGGTTTCA CTTAGGTCCA CGAACTTGCA AAACGAGCAT 
    CGAGATCTCT AAACTTGGTT TAATGTATCA TCCTAGTCCA AAGCATCGTT 
    TGACTGTGGT CTTGCCTACG TGGCATGCCA TGTGGACGAT GACATGGATT 
    TTTTAAAAAA AATTTCTCCC TTCTGCCACT GACAGGTACT GGCAGGGCCT 
    CTCTTACCTT ACTTTTCCCT CACTTTCGCC GGCGACCGAA GCGGCGACGG 
    GCGGGGTGGC CGACGAGAAA GGAGCAGCGC GCGGGAGCCG GCCGGCGGGA 
    GGAGAGGAGC GGCGCGTGTG CGCGGGCGCC GGCCGACGGG AGGAGAGGAG 
    CGGTGTGCGT ACACGGGCGG CGGCCGGAGA GGATAGGAGC AGCACGGGCA 
    CGCGGGGGGA GGTGTCGCCG ACCACGCCCG GGGAGGGGTC GCCGACTGCG 
    GCCGTGCGTG CCAGGGGAGG TGTTGGCCAT GGAGCGCGCG AGCTCGGTGG 
    CGGAGATGAA GCCATTGCCG CCGCCGGCCT ACCCGCCCCC TAGCTAACCT 
    TGCCGGCCGG CTGCCCCGCT TCGACCCGCC TGTCACCCGC TTCGGTCGCC 
    GGCCGCCCGT CCCACTCAGT GTTGTGGATG ACGGAATACG GATGTCGGAC 
    GGAGAGGGTA CCGCTAAACG ATTAATTGGA GTACGGATGA GTAATCGGAA 
    TTTGACGGAA ATTTAATGTT TTGGACAAAT ATATGTACAT AACTCATAAA 
    TCATAATAGC TTATTATTTT TGACAGATAA ATGCATATAA CTACATATAT 
    ACCTACTATT CTTAAATAAA AATAAGGATA ACATGACATT AACTCGACAT 
    AAAAATATGG TAGATTGGAT TTGAAAGAGG TTTAGATGAA AAGAACTAAC 
    CATAGACTTG CAGGTTGTAG CGGTAGGAAT GAGCTGCGAG GATTTTGGGA 
    TTGCAAACGA CGTTCTGTTA GCTATATAGT GCTAGGTTAC ATAACTAATG 
    GGCCAGTATA GTTATCGTGG CCTGGCTGGG CTTGCCTTGT CACGTGATTA 
    GGCCCGTTTA TTCGGCCGAT TAGTCGGATA CGGCCGATTA GTCGCTAATG 
    ATGGTGATTA TACATCCTGA AATGACTAAT GTACACCGTT TTGCTAAAAC 
    GTGAGGGAGA GGTCAGCGCC ACCATTTTGA CGTCCGAATA TACAGCCGTA 
    CCAACCGTTA TCCACAACAC TGGTCTCACT TAATTGGCCG AAGAGAGAGG 
    ATAGAGAGGA GGGGAGAGTA GTGAGGCCCT GACAGGCTGT CAGCGGCAGA 
    AGG

    Gene models with high sequence identity

    1. AT1G80830.1 [+] show detail - natural resistance-associated macrophage protein 1
      E-value: 2e-41; Score: 168.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Natural resistance-associated macrophage protein 2.2e-31
    HMMPanther METAL TRANSPORTER NRAMP (NRAMP) 6.7e-30
    HMMPanther Natural resistance-associated macrophage protein 6.7e-30
    FPrintScan Natural resistance-associated macrophage protein 2.2e-10
    FPrintScan Natural resistance-associated macrophage protein 2.2e-10

    See the detailed result >

    AT1G80830.1

    Model type
    Protein coding
    Short Description
    natural resistance-associated macrophage protein 1
    Curator Summary
    Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants.
    Computational Description
    natural resistance-associated macrophage protein 1 (NRAMP1); CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: NRAMP metal ion transporter 6 (TAIR:AT1G15960.1); Has 5566 Blast hits to 5511 proteins in 1695 species: Archae - 118; Bacteria - 4154; Metazoa - 357; Fungi - 273; Plants - 337; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR