K34150

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34150

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34150

Determination of introduced cDNA(s)

  • J033115M19 - Rice Full-length cDNAs - Original: J033115M19

    full reading [+] show sequence

    Nucleotide sequence: J033115M19 - full reading 
    GACCACCACC ATAAAAAAAC ACCGGGAGGA GGAGGAGATA GATGGGCAAC 
    TGCGGGACGC GAGAGGAGAA TGCCGTCGTC GCGGCGCACG CCCAAGTTCA 
    GCAGCTCCAC TTGCTACAAC ATCCTGTCAA GAATGCTGTT GCAGAGAGGA 
    AGCACACCCG CATCTCATCA GATATGAGTG ATCCTTCAAC ACCTAGGAAA 
    ATTGAAGTTG AAGATGCCAA GAACATCTCC ATATACAACG ATGTGATTGA 
    CTTATTGTTT GAACTTGAGA CCATCACAAA AAGCTTCCGT GCTGACTACC 
    TTCTTGGTGA AGGAGGGTTT GTGACTGTTT ACAAGGGCTA CATAGATGAG 
    AATGTCAGGG TTGGTCTGAA GTCACTACCT GTTGCAGTCA AGGTGCTCAA 
    CAAAGATGGA CATCAAGGAC ACAGAGGATG GCTCGTGAGT TGCCAACTTG 
    TTCAATATTC ACTATGGTTG CCATCATAAG CCCACCACAT GTGGTGAGCT 
    TACGATGACG ACCACAGTTT GTTAAGCATG CGAGCCGCAT GCGGCAGATC 
    GTGTGATTCA TTTTCTGTTG TGGAATGTAT TATATATTAT CGTATACCTA 
    TATTCTTCAC TCAAAAAAAA ATCTCATTTT GTTC

    Gene models with high sequence identity

    1. AT5G01020.1 [+] show detail - Protein kinase superfamily protein
      E-value: 4e-33; Score: 137.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G01020.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G05940.1); Has 117465 Blast hits to 116000 proteins in 4235 species: Archae - 97; Bacteria - 13843; Metazoa - 43298; Fungi - 9750; Plants - 33095; Viruses - 372; Other Eukaryotes - 17010 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023115C24 - Rice Full-length cDNAs - Original: J023115C24

    full reading [+] show sequence

    Nucleotide sequence: J023115C24 - full reading 
    GACAGCTTCC ACTCCACGAA AACCCTCTGC CTCCTTCGCT CGCTGCACCC 
    TCGTCTCGGC GATCCATCCA TGGCTGCCAG GAAGTTCTTC GTCGGCGGCA 
    ACTGGAAATG CAATGGGACA GGGGAGGACG TGAAGAAGAT CGTCACCGTC 
    CTCAACGAGG CCGAGGTGCC CTCCGAGGAC GTCGTCGAGG TGGTGGTGAG 
    CCCGCCGTTC GTGTTCCTGC CGCAGGTGAA GGGTTTGCTC CGGCCGGACT 
    TCTCCGTCGC CGCGCAGAAT TGCTGGGTGC GCAAGGGCGG CGCCTTCACT 
    GGCGAGATCA GTGCCGAGAT GTTGGTGAAC CTGCAGGTGC CTTGGGTGAT 
    TCTGGGACAC TCTGAGCGGA GAGCGCTGAT GGGCGAATCA AGTGATTTTG 
    TTGCTGACAA AATTGCGTAC GCACTTTCCC AAGGTATCAA GGTAATTGCT 
    TGCATTGGTG AGACCCTTGA ACAGAGAGAA GCAGGAACAA CGATGGAAGT 
    TGTTGCAGCG CAAACTAAAG CTATTGCAGA GAAGATATCC GATTGGACCA 
    ATGTTGTTTT GGCATATGAA CCAGTTTGGG CCATTGGAAC CGGCAAGGTT 
    GCAACCCCTG CTCAGGCTCA GGAGGTTCAT GATGGTCTGA GAAAGTGGCT 
    TGTGACTAAT GTTAGTCCTG CAGTTGCTGA ATCAACCAGG ATTATTTACA 
    GAGGCTCCGT AAATGGAGCA AACTGCAAAG AACTTGCTGC TAAACCTGAT 
    GTTGATGGAT TCCTTGTTGG AGGAGCTTCA TTGAAGCCTG AATTTGTGGA 
    CATCATCAAG TCTGCTACCG TCAAGTCTTC TGCTTAGTGT TCTGGGTTGC 
    AACCAGATGA TCGTAGGAGT TAATGCTGCC AATTTTAAGT TATGACATGT 
    TTGACCAGCT TGCTTTGTTA TATCTCGAAG TCAGTGAACT CCATATCGTT 
    CCATAGAGCA TGCAGCCACC TGTGGTTGCT TTTTTTCTTT TTGACTTTTT 
    CTCCCGAGAG GATCAGATGA ACTGAAAGTG CCGTTAATGT CTGTATTATC 
    AGAAGTTTGT TGATGGCTTG ATGCTATAAT AGTTGAACCT GATACTTCCT 
    GAGTG

    Gene models with high sequence identity

    1. AT3G55440.1 [+] show detail - triosephosphate isomerase
      E-value: 1e-105; Score: 380.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Triosephosphate isomerase 4.1e-94
    HMMPanther Triosephosphate isomerase 2e-153
    Coil coiled-coil 0
    HMMPfam Triosephosphate isomerase 4.5e-85
    ProfileScan Triosephosphate isomerase 79.27
    HMMTigr Triosephosphate isomerase 2e-126
    PatternScan Triosephosphate isomerase, active site 0
    Gene3D Aldolase-type TIM barrel 1.1e-87

    See the detailed result >

    AT3G55440.1

    Model type
    Protein coding
    Short Description
    triosephosphate isomerase
    Curator Summary
    Encodes triosephosphate isomerase.
    Computational Description
    triosephosphate isomerase (TPI); FUNCTIONS IN: triose-phosphate isomerase activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Triosephosphate isomerase, active site (InterPro:IPR020861), Aldolase-type TIM barrel (InterPro:IPR013785), Triosephosphate isomerase (InterPro:IPR000652); BEST Arabidopsis thaliana protein match is: triosephosphate isomerase (TAIR:AT2G21170.1); Has 11466 Blast hits to 11464 proteins in 3595 species: Archae - 48; Bacteria - 6204; Metazoa - 1205; Fungi - 243; Plants - 477; Viruses - 0; Other Eukaryotes - 3289 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR