K34202

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34202

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34202

Determination of introduced cDNA(s)

  • J023022G20 - Rice Full-length cDNAs - Original: J023022G20

    full reading [+] show sequence

    Nucleotide sequence: J023022G20 - full reading 
    GCCAGCGCCG CCGCTACTCC CGCTCCCCAC CGGCGCGCGC CGCCGTCTCC 
    CCCCACGCCG GCGCCGCCGT GTACCGGGGC TCCCGACTTC CCCTTCCACC 
    GGAGCTGCTC TTCGGCCTCC TCCCCCTTCG CCGGCCGCAG CAGCAGAAGC 
    ACCCAGCGCC CGTGAGCCCG AGTCGCCCCC CACCTCGGCG AGGCCTTGAC 
    CTAGGCTGGA ATACCGGATG TGAATTTGAT TGTCAGAGGT CTTCAGACCA 
    GATGTGCTGT GAGCACTCTG TCGCTCAGTT CTCTTAAGAT CAACAACTTA 
    ACCCTGAAGA AAATTTAGCT TTATACTGCA AGCCACTTGA GTTGTACAAC 
    TTTATTCGAC ACCGAGCCAT TGAAAATCCT CCTTATCTTC AAAGATGCCT 
    TCTTTATAAG ATACGTGCAA AACAAAAAAA AAGGATACAG ATAACTATAT 
    CATTACCTGG AAGTAACAAT AAGGAATTGC AAGCACAGAA TATCTTTCCT 
    CTGTATGTTC TGTTTGCTAG ACCTACTTCA AATGTTCCTA TAGAAGGACA 
    TTCTCCAATA TATCGGTTCA GTCAGGCCCG TTTGCTTACT TCCTTTAATG 
    ACTCTGGGAA TAATGACCGT GCTGAAGCCA CATTTGTTAT TCCTGATCTG 
    GAGACTTTAA TTGCCACCCA AGCTTATGGT CTTACTTTTA TCCTTGTTAG 
    CCGCGGTACC AAAAAAAATA AAGGGCGAAC TGGACAAAAT CTTTGTGAAA 
    ATGACTGTTC TGAGAAACAT GTGGACTACT CTTCTCTCCG AAAGCTTGCA 
    GGGAAATGTT TCTGGGGTAG AATTCCGATC ACTTTACTTA ATTCATCTTT 
    GGAGACTTGT GCGGATTTAA TTTTGGGGCA TATAGTGGAG TCACCTATCA 
    GTATATGTAT GAGCCCAGGC TACTTAGAGC CAACATTTCT TGAGCATGAC 
    AATTGCTTGT CATTTTGTTC CCGTAAAGCT GATGCTATGG TTCCATATCA 
    GTTGCAAGTA AAAGTATCTG CAGCAGAGGC TGGTGCAAAA GACATACTCA 
    AATCTCCGTA TAATTCCTTC TCATATAGTG ACGTCCCACC ATCCTTATTA 
    CTGCGTATTG TAAGGCTAAG AGTTGGAAAT GTGCTCTTTA ACTACAAGAA 
    CACACAAATG AGTGAAGTAA CGGAAGATTT TACTTGCCCG TTTTGCTTGG 
    TACGGTGTGG GAACTTCAAG GGTCTGGAAT GTCACATGAC TTCATCACAT 
    GATCTGTTCC ACTACGAATT CTGGATATCT GAAGACTACC AGGCTGTTAA 
    TGTTACGCTG AAGAAAGATA ACATGAGAAC AGAGGTAAAT TAGTGATAAA 
    GGACATACAC TGTACCTAAT TGACCTAGGT TTGATGTATC AGGGTTGTGG 
    GATCCAGCCC ATGCAAACTA GCATAAATTT TACGTACATG GCTTAAAAGC 
    TCCATTTCTA TTTAATATTG ATTTAAGTGA AAATCTTTGT TTTAGAACCA 
    TTACTCTCTT GAAAGACGGT GTTGGGCATG ATGATGTGTT CTACACCCAC 
    TCCACTATAA AGTCTTTTGT GGCTATAAAT GTGTACTCAT CTGTGTATTG 
    TTTGTAAGAT TTTCTAAAAC AATTGTATAA AGCACACAAG GTTGCCAATG 
    GGTCCC

    Gene models with high sequence identity

    1. AT5G51230.3 [+] show detail - VEFS-Box of polycomb protein
      E-value: 2e-72; Score: 270.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G51230.3

    Model type
    Protein coding
    Short Description
    VEFS-Box of polycomb protein
    Curator Summary
    Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.
    Computational Description
    EMBRYONIC FLOWER 2 (EMF2); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polycomb protein, VEFS-Box (InterPro:IPR019135); BEST Arabidopsis thaliana protein match is: VEFS-Box of polycomb protein (TAIR:AT4G16845.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR