K34217

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34217

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34217

Determination of introduced cDNA(s)

  • J023130P03 - Rice Full-length cDNAs - Original: J023130P03

    full reading [+] show sequence

    Nucleotide sequence: J023130P03 - full reading 
    GGGTGGGCCC AGGTCGTCCC CACACGACAG CGCTCCGCCT CTCCTTCCCG 
    ACTCCACCGA CCCCCCGCCG AGCTTTCTCG CCTCCCGCGA AGTCGCCACC 
    GCGCGCTGCT CGTCCGTCGT CGCCGCTGCA TCCGCCTCCT CCTCGTCCTC 
    CCTACGGCCG TAGGGTGCGG CGGCGGAGGG GGCGACGATG CCACGCTGCG 
    GAGCCGGAGG TCCCTGCGTG TGGATCCGGG CCCTATCCCA GCCGCAACGC 
    CACGGGAGGA AGCCATGGCG GGGCGTGAGG GTCGTCGTGC TGCTGCTGCA 
    CGCGCTGTTC ATCGGCGCCG TCTTCCTGCT CGATCCGACG CTCCAGAGGC 
    AAATCCACGA GGCCAAGTGG TACATAATTC TATATGGGTT GCTGGTTTTA 
    CTTACCTTGG TACAATACCT ATATACAGCC ACTTCTTCTC CAGGATATTT 
    ACCTGATATG TTGACAGCTG GCTCAAGGAT GCATGCAACC TTTATTAATA 
    CAACAACTCT CTCAAAGCAG GCCAATTCCA AAAGTGGAAG CTTAAACTCT 
    GCCATGAGTC GCAGCAAAAT AGATCAGCAA AATCCACAAT CCACTACAGC 
    TTTGTTACTA CAGCAGACGA TGGATCTATA TCCTCCTGGG ACATCCACCA 
    GTTGTATGCC TCCATTTTAT TTTAGGGATT TCACATGCTC TTACTGCCGG 
    CTCATCCAGC CTCCACGCAC CAAGCACTGT CATGACTGTG ATAAATGTGT 
    CCTCCAATTT GATCATCATT GTGTTTGGCT TGGAACATGC ATTGCTAAAA 
    GGAACTACTG CAGATTTTGG TGGTACATAT TCGAACAAAC AGTTTTAACT 
    GTCTGGACTG TTGCTTTCTA CATTCAGTTC TTTTATTTGG GCATCGTTGT 
    ATCCTGGTGG AAGTTTGCTA TTGGTATTGT ACTTTTGGTA GCATTGATAT 
    TAATCCTCGT GGTCCTGCTG CCCTTGTTGA TATTCCATGC TTATCTTGCT 
    CTTACGAACC AAACAACATA TGAAATTGCC AGAAGGAAGC GGATTTCTTA 
    CCTAAGGGAG GTTCCTAGCA GGGTTCATCC ATTCAGCAAA GGCATTTGCA 
    GAAATCTGTA TGATCTTTGC ATCTCTAAAC AGAGGGGATT TTTTCTGGAA 
    GCAGTGCCCC CGCTGGAGGT ACTACAAGCC AGAGCTAGAC CTTACACATG 
    CCGAGATGTA ATCTCCTGCC GGTGCTGTTA GGAGCTTGGT ATATGCTCTA 
    TATCTGGACT CACTAGTTTA GTGTAATGCA AATAATATGG TAGCTATAAT 
    TTGTGTCTCA TTTTTCATGT ACAGTGTATG CGCATTTTTC TCCTAGAAAA 
    TCTGGATTGA TCGATATCCA TACCTTGATC TGAGTATGCT CAAATCTGGA 
    TTTTTTTTTC T

    Gene models with high sequence identity

    1. AT3G51390.1 [+] show detail - DHHC-type zinc finger family protein
      E-value: 4e-68; Score: 255.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, DHHC-type 1.2e-19
    HMMPanther ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 1.4e-36
    ProfileScan Zinc finger, DHHC-type 22.338

    See the detailed result >

    AT3G51390.1

    Model type
    Protein coding
    Short Description
    DHHC-type zinc finger family protein
    Computational Description
    DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G56930.1); Has 4950 Blast hits to 4948 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 2153; Fungi - 685; Plants - 832; Viruses - 0; Other Eukaryotes - 1280 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR