K34222

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34222

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34222

Determination of introduced cDNA(s)

  • J023091G01 - Rice Full-length cDNAs - Original: J023091G01

    full reading [+] show sequence

    Nucleotide sequence: J023091G01 - full reading
    GACGAAGCAG ATCGAAGCAT CGCGCCCGAG CCAAACCTAA ATCCCTCGGA 
    GAGAGAGAGA GATAGAGAGG AGGAAAAAAT CAAATCTTTT TGAGGAAGAA
    ATCATGGCGT GGCAGCAACC CATGGACGGA TCCCACGCGA GCGGGAGCAA
    GGCGGCGGCG GCGGTGGCGG ATGGCCCGGG AACCCAGAGG ACGCAGTATC
    CTTATGTGAC TGGCTCATCA ATTATTGCAC TGAAATACAA GGATGGTGTC
    ATCATGGCAT CCGACACTGG AGCCTCATAT GGCTCAACTT TGCGATACAA
    GAGCGTGGAG CGCATTAAGG CTGTTGGTAA GCATAGCCTT ATTGGAGCAA
    GTGGGGAGTT CAGTGATTTC CAGGAGATTT TGCGCTATTT GGATGAATTA
    ACCCTGTCCG ATCATATGTG GGATGATGGA AACTCCTTGG GTCCCAAGGA
    GGTCCATAGC TACCTGACGA GAGTGATGTA CAACAGGCGC AACAAGTTTG
    ATCCCCTCTG GAACTCCCTT GTAATTGGTG GGGTGAAAAA GGGTCCAAAG
    GGTGAAGAGA AATATCTTGG CATGGTTAAC ATGATTGGTA CACACTTTGA
    GGAAAACCAC ATTGCCACTG GGTTTGGGAA CCATATGGCA ATCCCAATAC
    TTCGTACTGA ATGGCGCGAG GACATGACAT TTGAGGAAGC TGTCAAGCTT
    GTTGAGAAGT GCTTGCTTGT CCTGCTGTAC CGTGACCGAT CATCTATTAA
    CAAGTTCCAG ATTGCCAAGA TCACAACTGA GGGAGCGACC ATCTACCCGC
    CATACTCATT GAAGACTTAC TGGGGCTTCG CTGCCTTTGA AAATCCGGCC
    CAGGGTGCTG TAGGATCATG GTAGATTTAT TTATGCTGCA GAGGCTGAAT
    GTCAGGCCAT GAACCAGGAT GAAGAAACAG GCTCTGTTGC TGAGAGGCCT
    TGTGAAATGT TTTATCTGAA CATCAATGAA ACTCCAGATT TGCTTTGTAT
    GACATTCTGA TCGTGCAACT TAGATTTCTA CCTTCTGTGG CCGTTAAGCC
    TGGAACTATA TTATATATGA TGAAAGTCTG TTTTGTTTCG

    Gene models with high sequence identity

    1. AT1G56450.1 [+] show detail - 20S proteasome beta subunit G1
      E-value: 2e-90; Score: 329.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTEASOME SUBUNIT BETA TYPE 4 7.9e-112
    HMMPanther PROTEASOME SUBUNIT ALPHA/BETA 7.9e-112
    HMMPIR Proteasome endopeptidase complex, beta subunit 1.1e-158
    PatternScan Proteasome, beta-type subunit, conserved site 0
    HMMPfam Proteasome, subunit alpha/beta 4.3e-35
    Gene3D no description 1.9e-60
    superfamily N-terminal nucleophile aminohydrolases (Ntn h 1.2e-56

    See the detailed result >

    AT1G56450.1

    Model type
    Protein coding
    Short Description
    20S proteasome beta subunit G1
    Curator Summary
    20S proteasome beta subunit PBG1 (PBG1) mRNA, complete cds
    Computational Description
    20S proteasome beta subunit G1 (PBG1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, cytosolic ribosome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome endopeptidase complex, beta subunit (InterPro:IPR016295), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT4G31300.2); Has 2530 Blast hits to 2530 proteins in 413 species: Archae - 597; Bacteria - 46; Metazoa - 632; Fungi - 578; Plants - 277; Viruses - 0; Other Eukaryotes - 400 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR