K34227

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34227

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34227

Determination of introduced cDNA(s)

  • J023054F15 - Rice Full-length cDNAs - Original: J023054F15

    full reading [+] show sequence

    Nucleotide sequence: J023054F15 - full reading 
    GAGACCCGAA GCGAAGTTCA ATCCATCCCC AAATGTCCCG GCCAACCCAA 
    CACCACCCCA CCGCCGCCGC CACCGCCGTC ATCCTCCTCT TACTTGCAGT 
    ATCCCCGGCG CGGATCCGGA CGACGAGCGG TGCCTGTCGA GCCTCCAGCA 
    ATCTTTGTCC GGCCTCCGCA ACTGGAGCAA GGCCTCCTTC TCCGCCCCCT 
    GCGAGGGCTT CATCTCCCAC CTCCAGGGCG TCACCTGCAA CAACGGCCGT 
    GTCTACAAGC TCTCCCTCCC GGGCCTCTCC CTCGCCGGCA CCATCCCGCC 
    GGACCTCTCC AACTGCACCA ACCTCCAGTC GCTCGACCTC TCCTCCAACG 
    CGCTCTCCGG CGCCTTCCCC CCGGAGCTCT CCGGCCTGCT CAACCTCGCC 
    GTGCTCAACC TCTCCGCCAA CCGCCTCTCC GGCGCCATCC CAAGGGACCT 
    CGCCCGCTGC GCATACCTCA ACGTCATAGA TCTCCACGCC AACCAGCTCA 
    CCGGCAGCAT CCCCGACGAG CTCGGCCTCC TCGTCCGCCT CTCCACCTTC 
    GACGTCTCCT ACAACCGCCT CTCCGGTCCC ATCCCGGTGC TCCTCGCCAA 
    CCGCTCCGGG ACGACGGGGA GGTTCAATGC CACCTCCTTC GTCGGGAACA 
    AGGACCTGTA CGGCTACCCG CTGCCGCCCA TGCGGGGGCA CGCCCTCTCC 
    GTCCTCGCCA TAGTCGGCAT CGGCCTCGGC AGCGGCCTGC TCAGCCTCGT 
    CCTCAGCTTC TCCGCCGTCT GCCTCTGGCT ACGCGCCACC GACCGCACGG 
    CCACCATGCC CGGCGAGGAG GGCAAGATCT CCCACCTCAT GCCCGACTAC 
    TGAACCCAAG ATCCGTGTTG GATTTCTGGA TCCGATCGAG CAGTGGAGCG 
    TAGCCGCCAT CTTCTTTCTT GCCTCAGATG CTCATCTAAT TGCAGTTAAT 
    AATTAATTGC TGCATTCTTA TCTCTTTTTT AGCGTGGGCT TTCTTCTTTT 
    CTTCTCTGGT GTTCAATAAC TAATTTTTTT TTTCTTCTTT TACTTTGGAT 
    TTCTAGAGAG AGTCATCAGT GAGAGGAGTT AGGCGTGATG ACATCAGCTT 
    TTGTGTATAG GTACTACCGA AGAATTTATG TCACTTCACC GG

    Gene models with high sequence identity

    1. AT3G49750.1 [+] show detail - receptor like protein 44
      E-value: 2e-61; Score: 233.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Toll-like receptor, leucine rich repeat-containing 6.7e-06
    FPrintScan Toll-like receptor, leucine rich repeat-containing 6.7e-06
    FPrintScan PRICHEXTENSN 8.5e-10
    FPrintScan PRICHEXTENSN 8.5e-10
    FPrintScan PRICHEXTENSN 8.5e-10
    FPrintScan PRICHEXTENSN 8.5e-10
    FPrintScan PRICHEXTENSN 8.5e-10
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.8e-45
    HMMPfam Leucine-rich repeat 0.026
    HMMPfam Leucine-rich repeat 0.58
    superfamily L domain-like 2.5e-32
    Gene3D no description 1.6e-32

    See the detailed result >

    AT3G49750.1

    Model type
    Protein coding
    Short Description
    receptor like protein 44
    Computational Description
    receptor like protein 44 (RLP44); INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 57 (TAIR:AT5G65830.1); Has 65414 Blast hits to 15809 proteins in 634 species: Archae - 17; Bacteria - 2183; Metazoa - 2191; Fungi - 213; Plants - 57499; Viruses - 0; Other Eukaryotes - 3311 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR