K34248

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34248

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34248

Determination of introduced cDNA(s)

  • J023011P12 - Rice Full-length cDNAs - Original: J023011P12

    full reading [+] show sequence

    Nucleotide sequence: J023011P12 - full reading 
    GGCCCCCACG ACGCTCGCTC TCTCCTCTCT CTCCCTCTTC CGCCGCCGCG 
    CTTGGGGAAG GAAGGAGAAA GCAAGCCATC GGCCCCCGCC TCCGCCTCCG 
    AAGGGACATT GTTGCTAGTT GGTGATGGCT GAGCAGGCTA ATCAACCGAC 
    TGTCCTTCAG AAGTTCGGTG GCCAGTTCCA CCTTGGCTCC AGCTTTTCTG 
    AAGGTGTACG GGCTCGTAAC ATCTGCCCAT CTGTCTCATC CTATGACAGG 
    CGCTTTACCA CAAGGAGCTA CATGACCCAG GGCCTTGTCA ATGGTGGCAT 
    CAACGTCCCA ATGATGTCGT CCTCTCCAAT TTTTGCTAAT GCTCCAGCTG 
    AGAAAGGTGG CAAAAACTTC ATGATTGATT TCCTCATGGG TGGAGTGTCA 
    GCCGCAGTTT CAAAGACTGC TGCTGCTCCG ATTGAGCGTG TGAAGCTGCT 
    TATCCAGAAC CAGGATGAAA TGATCAAGGC TGGTAGGCTC TCAGAGCCAT 
    ACAAGGGTAT TGGGGACTGC TTCGGACGCA CTATCAAGGA TGAGGGTTTT 
    GCTTCATTGT GGAGAGGAAA CACTGCCAAT GTGATCCGTT ACTTCCCCAC 
    CCAGGCTTTG AACTTTGCTT TCAAGGATTA CTTCAAGAGG CTGTTCAACT 
    TCAAGAAAGA CAAGGATGGT TACTGGAAGT GGTTTGGTGG CAACCTTGCC 
    TCTGGTGGTG CTGCTGGTGC TTCATCTCTG TTTTTTGTGT ACTCCCTTGA 
    CTATGCTAGG ACAAGGTTGG CCAATGATGC GAAGGCTGCC AAGGGAGGAG 
    GTGAAAGGCA GTTCAATGGC CTTGTGGATG TTTACCGCAA GACTCTCAAG 
    TCAGATGGCA TTGCTGGGTT GTACCGTGGA TTTAACATCT CATGTGTTGA 
    AATCATTGTC TACCGTGGTC TGTACTTTGG AATGTATGAT TCTCTGAAGC 
    CAGTTGTACT CACTGGGTCT CTCCAGGACA ATTTCTTTGC AAGCTTTGCC 
    CTTGGGTGGC TGATCACCAA CGGTGCAGGT CTTGCCTCTT ACCCCATTGA 
    TACCGTCCGC AGAAGGATGA TGATGACCTC TGGAGAGGCT GTCAAGTACA 
    AGAGCTCCAT GGATGCTTTC TCCCAGATCC TGAAGAACGA GGGTGCCAAG 
    TCACTGTTCA AGGGTGCTGG TGCCAACATC CTACGTGCCA TTGCTGGTGC 
    TGGTGTGCTC TCAGGCTATG ACCAGCTGCA GATCCTCTTC TTTGGAAAGA 
    AGTACGGCTC GGGCGGTGCC TAAACTGGCA GAAAATGATG ACGAACAAGT 
    GTTTATTCCT GGTCCTGCAC TAACGGGATC TGGTGAATTT TGCCTTTTTA 
    ACATTGAAAA CAATAATAAT TCTTGTAGGG GAGAACACTC CCCGACATTC 
    GTTTTTTGGT GGAAGCGTTT ATCTCCAAAC ATTGTCATAG GCGGAGGCGT 
    TAATCGCAAA CAGTTTACCA TCATAGGGTT GAGTTTGAGT TGAGTCTGGC 
    CGGCTCTGTT ATGTCTGGCG ATTTTCCTAC CATACATTAC CCTCGGTGAA 
    ATATCGAAAG ATTATTGAGT TGCTGTC

    Gene models with high sequence identity

    1. AT3G08580.2 [+] show detail - ADP/ATP carrier 1
      E-value: 3e-164; Score: 575.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Mitochondrial substrate/solute carrier 1.5e-24
    HMMPfam Mitochondrial substrate/solute carrier 2e-20
    HMMPfam Mitochondrial substrate/solute carrier 1.1e-16
    superfamily Mitochondrial substrate carrier 4.9e-80
    HMMPanther ADP,ATP CARRIER PROTEIN 4.5e-188
    HMMPanther Mitochondrial substrate carrier 4.5e-188
    ProfileScan Mitochondrial substrate/solute carrier 25.86
    ProfileScan Mitochondrial substrate/solute carrier 22.406
    ProfileScan Mitochondrial substrate/solute carrier 19.038
    FPrintScan Mitochondrial carrier protein 8.9e-67
    FPrintScan Mitochondrial carrier protein 8.9e-67
    FPrintScan Mitochondrial carrier protein 8.9e-67
    FPrintScan Mitochondrial carrier protein 8.9e-67
    FPrintScan Mitochondrial carrier protein 8.9e-67
    FPrintScan Mitochondrial carrier protein 8.9e-67
    FPrintScan Adenine nucleotide translocator 1 2.7e-66
    FPrintScan Adenine nucleotide translocator 1 2.7e-66
    FPrintScan Adenine nucleotide translocator 1 2.7e-66
    FPrintScan Adenine nucleotide translocator 1 2.7e-66
    FPrintScan Adenine nucleotide translocator 1 2.7e-66
    FPrintScan Adenine nucleotide translocator 1 2.7e-66
    FPrintScan Adenine nucleotide translocator 1 2.7e-66

    See the detailed result >

    AT3G08580.2

    Model type
    Protein coding
    Short Description
    ADP/ATP carrier 1
    Curator Summary
    mitochondrial ADP/ATP carrier
    Computational Description
    ADP/ATP carrier 1 (AAC1); FUNCTIONS IN: binding, copper ion binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 2 (TAIR:AT5G13490.2); Has 19858 Blast hits to 12534 proteins in 484 species: Archae - 0; Bacteria - 0; Metazoa - 8967; Fungi - 5060; Plants - 3882; Viruses - 0; Other Eukaryotes - 1949 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR