K34303

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34303

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34303

Determination of introduced cDNA(s)

  • J013001C12 - Rice Full-length cDNAs - Original: J013001C12

    full reading [+] show sequence

    Nucleotide sequence: J013001C12 - full reading 
    GCTCCGAATT CCCAAACATC CAAAGAAACA CCCACAAAGA AAAAAAAAGT 
    TCGGTTTTTT ATCCGCTTTG CTCACGGCAG CGAGGAAAAA AAGCTGGAAT 
    TTTTTATACT CGTACCACGG CGAGTAGTGG TGGTGGTGGT GGTAGTACAA 
    TCCCAATAGA AGAAGAAGAA GAAAGAATAA ACTAGCAGCT CAGGAGGCGG 
    AAGCGAGCGC ATGAGCTCGA GAGAAAGAGA GGCGGAGAAG TGGTGAGGTG 
    AGGAGAGGAG AGGAGGGCGA GTAGTAGGCG TCTAGGTCCC ATCTCTAGGG 
    TAGTAGTAGT AGTAGGCTTG TCTCCTCTTC GTCATCTCTC CTCTCCTCTC 
    CTCTCTTCTC TTCTCTTCTC TCCGCCACGG CGCCACCCAC CTACCCCCGA 
    GGTCGCTGCT GCTGCTGCTG CTGCGGTTTT CGTTAGAAGA TACTCTCGGT 
    AGCATCAGAC CTGCATCTTG GAAGTTCAGT ATGGGTTCAG GAATGGTGAA 
    GAAGAAGGTG GTGAAGGCCG GTTCTTTCGA TTTGGATGCC AAACTTGATA 
    AAAGTTGGAT GAAGGATATC ACTTGTCCAA TCTGTCTGGA TTTTCCTCAT 
    AATGCTGTCC TATTGAGGTG CACCTCATAT GAGAAGGGTT GTAGGCCGTT 
    CATATGCGAC ACTGACCAAT CCCGTTCGAA CTGTCTTGAG CGGTTCAAAG 
    GTGCTCATGG ACTGCCGACC AATATGAAAG TCCCATCTTT TAATGGAGCC 
    CCTCTTGATA GCATTCATAT CATTTCGTCA AATACAACTG ACCGCCCAGC 
    TTGCCCGTTG TGTAGAGGCG ATGTTATTGG GTGGGTTGTT ATTGACGAGG 
    CCCGTCTGCA TCTTAACCAA AAGAAAAGAT GCTGCGAAGA AAGCTGTTGT 
    TCATATGTGG GCAACTTTCA TGAGCTTCAG AAGCACACCC AGCAGAAGCA 
    TCCAAATTCA CGCCCGTCAG AAATTGATCC TGCTCGGAGA GTTGATTGGG 
    AGAATTTCCA ACAGTCTTCA GATATCATAG ATGTCTTGAG CACGATACAT 
    GCACAGGTGC CTAATGGTAT AGTTTTGGGA GACTATGTCA TCGAGTACGG 
    TGATGATGAT GCCGGAGATG ACTATGAAGT TTACCACAGG GTTAGGGGGA 
    ACTGGTGGAC ATCCTGTATT TTCTGTAAGT CATTCTGCAG ATCTTCAGGA 
    GGCAGAAGTA GAGCAAGAGC AAGGGAAAGG AGAAGTAGTG GAAGGAGGAG 
    CAGCAATAGG TCTAGCCAAG AAAGCTTTAC TATTGAGGTG CCCTCGGGAT 
    CTGTTGACAT AAGGGAAATC AGATTTGATG AAATAGATGA TGAATATATA 
    GTTACAGGAG CAATGCCCGG CATTGCAGCA TCCAGGAGGA TCGCCAGTCA 
    TTACAGGGAT CCTAGATATG GACGCAGACG TTCATACTAC TAGGATGAAC 
    CAGCCAGCTG AAATGTAATG CAGTGCAGCC ACAACCAGAA TATTGTGCCT 
    CTACCCGCCT CTTTTTCTTG TTCTCTCAAA AATCTGGAAG ATGCTATCCC 
    AGCCCAAATT TGGTGTGCAT ATAAGATAGC AGCAAACCCT TCATTGTTGT 
    TCATTTACAG CAGGTTTCAA CATCTTAGGT TCCTATGTAA ATATGTAACC 
    ACTACCCTAT AGCAATGTTG ATCCAAGGTT TCTCTCCGGG AATCCATTTT 
    ATCTTAAAAA TGTTTCTCTG GAAATACACC AAACTTTTAC AGGAAAAGCT 
    CACAAATTTG CC

    Gene models with high sequence identity

    1. AT4G31410.2 [+] show detail - Protein of unknown function (DUF1644)
      E-value: 4e-65; Score: 246.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF1644 2.4e-64
    PatternScan Zinc finger, C2H2-type 0

    See the detailed result >

    AT4G31410.2

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1644)
    Computational Description
    Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT3G24740.2); Has 266 Blast hits to 247 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR