K34308

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34308

Determination of introduced cDNA(s)

J013169I11 - Rice Full-length cDNAs - Original: J013169I11

full reading [+] show sequence

GTGGGTCAAA AACATCGCGT TATCCTTCCC TCCTCTCGCC TCGGTGGTGT 
GCGTCTTCCC CACCCACCCC CAGTCTCCAA TAGCCACCTC CCACCTCCTC 
GCCGCCGCCT CCTCCACCGC CGCCTCCTCC GCCACCTTCC GCCCTCCCCT 
CCTCAGCCTC CGCTCCCCGC CGCCCTCTTC TCTCCGCCTC AACCGCAGGC 
GCCACTTCCA GGTGGTCCGC GCGGCCGAGA CCGACAAAGA GACGAAGGCC 
AATGCGCCCG AGAAAGCTCC CGCGGGAGGC TCCAGCTTCA ACCAGCTGCT 
CGGCATCAAG GGCGCCAAGC AAGAGAACGA CATATGGAAG ATTCGCCTTC 
AACTTACTAA GCCAGTGACA TGGCCTCCGC TTGTATGGGG AGTGCTTTGT 
GGAGCAGCTG CCTCTGGAAA TTTCCACTGG ACAGTTGAAG ATGTTGCAAA 
ATCTATTGTC TGCATGATAA TGTCTGGTCC ATGTCTTACA GGATACACAC 
AGACAATTAA CGACTGGTAT GATCGAGATA TAGATGCGAT AAATGAACCT 
TACCGTCCTA TTCCTTCAGG CGCTATATCA GAAAATGAGG TCATTACTCA 
AATTTGGGCA CTGTTGTTAG CAGGGCTTGG CCTGGGTGCT CTGTTAGATG 
TATGGGCAGG ACATGATTTT CCTATTATTT TTTATCTTGC TGTTGGTGGG 
TCCTTGCTTT CTTACATATA TTCAGCTCCA CCTCTGAAGC TCAAGCAGAA 
TGGATGGATT GGAAACTTTG CTCTTGGTGC GAGCTACATT GGCTTGCCCT 
GGTGGGCTGG CCAGGCATTA TTTGGAACCC TTACTCCTGA TATTGTTGTC 
CTGACTTCTT TGTATAGCAT AGCTGGGCTA GGGATTGCTA TTGTAAATGA 
CTTTAAGAGT GTTGAGGGAG ATAGAGCTCT GGGGCTTCAG TCACTCCCGG 
TTGCTTTTGG TATGGAAACT GCAAAGTGGA TATGTGTAGG AGCGATTGAC 
ATAACTCAAT TATCCGTTGC AGGCTACCTT TTCAGTTCCG GCAAGCCTTA 
TTATGCCCTG GCACTGCTAG GACTCACAAT TCCTCAGGTG GTCTTTCAGT 
TCCAATACTT CCTCAAGGAC CCTGTGAAGT ATGACGTCAA ATACCAGGCA 
AGCGCGCAAC CGTTCTTCGT CTTGGGCCTT CTGGTGACCG CCCTTGCAAC 
CAGCCACTGA TGAAAGCAGC AATCGCCCTG GACTGTGATT CTGTGACAGC 
GAAGTTTTGG GTGGAAGATG CAGATTGATG GTTCTCTGCA ACTGTTGGTG 
GAGCTAGGTT CAGCAGCTAT GTTCGCGAGT GTATTAGCGC TCTTTTGGCG 
GTGCTGGGTA GTAGAATGTA GAATCGTTTC TTGTTGATTC CCTGAACTGA 
TCCAGATCAA ACATCTTCTA AAGGTTCTGC GATGCAATGC TAGCTGCAGA 
CGGGAGATGG TACAGGGGGT CGTTTTGCTA CTTTGCCGCC GATGTTGTAG 
GGTGTGTAGA CAGACTGTAG ATGAATAATG TCAGTAACAC CTGTGGGGGG 
TTCAGTGCTA GTGGGCTGCA AAACTTGAGC ACTGCTTCGA TCAAATTGTG 
TCTTTGATTA TGAAATTATG GAATCCAGCA CAGGCAGGTA ATAATTTCGT 
AATAGAGCAT AAACAATTTG TG

Gene models with high sequence identity

AT3G51820.1 [+] show detail - UbiA prenyltransferase family protein
E-value: 2e-164; Score: 576.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Chlorophyll synthase, ChlG	3.4e-228
HMMTigr	Bacteriochlorophyll/chlorophyll synthetase	3.1e-152
HMMPanther	BACTERIOCHLOROPHYLL SYNTHASE	1.1e-77
HMMPanther	PRENYLTRANSFERASES	1.1e-77
HMMPfam	UbiA prenyltransferase	1.7e-41

See the detailed result >

AT3G51820.1

Model type: Protein coding
Short Description: UbiA prenyltransferase family protein
Curator Summary: Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP.
Computational Description: G4; FUNCTIONS IN: chlorophyll synthetase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bacteriochlorophyll/chlorophyll synthetase (InterPro:IPR006372), Chlorophyll synthase, ChlG (InterPro:IPR011799), UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: homogentisate prenyltransferase (TAIR:AT3G11945.1); Has 2782 Blast hits to 2782 proteins in 800 species: Archae - 310; Bacteria - 1584; Metazoa - 63; Fungi - 24; Plants - 236; Viruses - 0; Other Eukaryotes - 565 (source: NCBI BLink).
Link: InterPro Scan - TAIR