K34331

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34331

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34331

Determination of introduced cDNA(s)

J033070I07 - Rice Full-length cDNAs - Original: J033070I07

full reading [+] show sequence

GGCGGCATCG TCGGAGCCGA CGCGAATGGC TTCCCGCCTC CTAACCAGAT 
CAACCGCCGC GCGCCTCCTC TCCCACCTCC GCTCCTCCGG GGCCCTGAGC 
CCTACCCACC ACCACCACCA CCACCTCGAT AATGGCGCCG CCTTGGCCTC 
CCTCCTGGGA CTCGGCCGCG GTGGCCTCCC TGCGGCGGCC GGACCATGGT 
CCCCTCGAGA CCCGCCGACG CGGTGGTTCT CTTCCCCGGC TACGGTGGCG 
GAGGCGCCGA TGACCGCGGA CGGGCTCACG GTGGACTCGA TCGCGGGGAA 
GGGGTGGACG ATCCTCCCCG AGGCCGAGAG CGACTGGCGC AGCCACGCCG 
CCGCCGTCGC GCAGTCCGTC AAGCTCATCA AGAAGCGGCT CAAGTGGGGA 
TGGATACTTG AGAGATCAAG GCAGTTGTCT GTGGTGTTGG AGAGGCCGGA 
CCTCTGGGAT GATCCAGTTT TCGCTGGGAA GGTTAGCCGT GAACATGGTG 
AGCTCATGGG CAAGATTAAA TCAGTGAACC AATTCGAGCA GGAGTTGATG 
GAGCACATTG ACATGTTGAG GCTTGCAAGA GAAGAGGACG ATAATGAACT 
TGAGACGGAA ACCATGAGGG CATTAGCCGA AATGAGAAGA AGTGCAAAGG 
AGAAAGAACT GAATGCATTG CTTTCTGGAG ATAATGACTC TTGCTCTTGC 
TTCATTGAGG TTCAGGCAGG AGCTGGAGGT ACTGAGAGCA TGGATTGGGC 
TGCAATGGTT ATGAACATGT ACAGCTCATG GGCCCAACGA CGAGGATACA 
CAGTCAGTAT TATAGAAGAA ATGCCTGGTG AAATAGCAGG AATCAAGAGG 
GCAACTATCA AAGTGGATGG TGAATATGCA TTTGGATATG CTAAAGCCGA 
AGTAGGTGTT CATAGATTGG TACGGATTTC TCCATTTGAC AGTGGAAAGA 
GGCGGCACAC TTCCTTTGCT GCTGTGGCTG TTGTACCTAT TCTTGGTGAT 
GGTTCTACCC GATACCAGAT AAAAGATTCA GATCTTCGGA TAGAGCGTTT 
CCGCTCTGGT GGTCCTGGTG GCCAACATGC CAACTGCACA GAAAGTGCTG 
TTAGAATTGT GCACATTCCA ACTGGTATAA CTGCAACTTG TCAAAATGAA 
AGATCACAGC ATATGAATAA GGCATCAGCA ATGGCAGTGC TCCAGTCTCG 
GCTGGACCAG CTTGAGATTG CCCGCCAAGC ACAGATGAAT GCAGACCACA 
CGCAATCACT CTCTGAAATC AGCTGGGGAA ACCAAATAAG ATCTTATGTA 
CTCCATCCAT ATCGTATGGT CAAAGATCTC CGGACAAACT ACGAAGTATC 
CGACCCTGAT TCAGTCCTCA ATGGGGACCT AGATGATTTC ATCTTGAACT 
TTTTGTCAAC GTCACTGGAT GAAGCTGATT GAAGTGCCTG TGCCTGAAGT 
CCCTGAAGAC AAACCATGCT TAAATTTAGC CTCAGCCTCA ATGATCAATC 
ATTCGATCCA CTGAGATACA GTCCAAGAGA TGGTAAGAGG GCAGCTTCAT 
TCTTTCCAAT ACTGACAAAT ATGACATCTC AAATGGTGAA AGACCAAGGT 
GTGCAACAAT TTTTCAAGTG CAAATATCAG AGCTAGAACG AGCTTATATT 
AGCTTTCTAG TTAGAAAAAT GGAAATATAA TGAACTTTTG TTTCATTGTT 
AGCCCATAGT TCCTTTTTGT ATTACTGGTG CTGGTGCTAT TTGTGAATGG 
CAATAGTAGT CTCCTAAATA TAGTCGTTTC TAGTTTCTAC TCAATCCAGC 
TGTCATACAT AAATTGTTTC TTTTTGTATT CCACTGGCAT GAATCAACTA 
TGGTGCAATC TTTTCCTTGC

Gene models with high sequence identity

AT1G56350.1 [+] show detail - Peptide chain release factor 2
E-value: 5e-176; Score: 614.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Peptide chain release factor 2	6.4e-140
HMMPfam	Class I peptide chain release factor	1.1e-33
HMMPfam	Peptide chain release factor	8.4e-30
HMMPanther	Peptide chain release factor 2	2.8e-166
HMMPanther	PEPTIDE CHAIN RELEASE FACTOR	2.8e-166
superfamily	Release factor (Pfam 00472)	4.5e-101
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT1G56350.1

Model type: Protein coding
Short Description: Peptide chain release factor 2
Computational Description: Peptide chain release factor 2; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor 2 (InterPro:IPR004374), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: high chlorophyll fluorescent 109 (TAIR:AT5G36170.2); Has 16865 Blast hits to 16865 proteins in 2794 species: Archae - 0; Bacteria - 10325; Metazoa - 292; Fungi - 236; Plants - 212; Viruses - 15; Other Eukaryotes - 5785 (source: NCBI BLink).
Link: InterPro Scan - TAIR