K34410

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34410

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34410

Determination of introduced cDNA(s)

  • J013034I10 - Rice Full-length cDNAs - Original: J013034I10

    full reading [+] show sequence

    Nucleotide sequence: J013034I10 - full reading 
    GATTGGAGAG GCTAAAACGG AAGAGCACAC TAGTGGTTTC ACTTGTGTCA 
    CTTGCACTGA CTAATTGTAC GAGCTCGCCA CGTACTGTCT CACCAGCTAG 
    CATGGCGACA TCGCCGTTGC CACGTTGGGC GGCGACGCCG AGCCCGTCGC 
    GCCCGCTGTG GCGTTCATCC GGCGGCGGTG GCGCCATCGT CAGTAAACTC 
    CTGCGTTCCC CATTCACCAC CGTGCTCGAG GCTGTCCGCG GGCGTGCTGC 
    CCCCGACGAC ACGCCGCCTC CTGTACAAGC TCCACCGGCG CCGGAGCACA 
    ACTGCGCCGG CGCGTTCGAC GGTATCGCCG TCGTCGCTGG AGATGGGAGG 
    GAGGAGCGGC TCGACGGGGG CGTGTTCCTG ACGTGGGAGG ACGTGTGGGT 
    GACGGCGGTG GACAGCGGGG GGAAGGCCGC CACCATCCTC AACGGCGTCA 
    GCGGCAGCGC GCGCCCCGGC GAGGTGTTGG CCATCATGGG CCCCTCCGGC 
    TGCGGCAAGA CTACGCTGCT CGACACCCTT GCCGGAAGAT TGGATTCAAA 
    CTTGAAGATG AAAGGGCAAA TTCTGGTTAA CGGTCGATGT CAGCAACTTG 
    CATTTGGAAC CTCGGAGAGT GAAGACAGAC TCCGGTGCAT GCCAGCTGTT 
    GCAGATGAAG CAATAGACAT TTTGGTGAAT TCATACAAAT CCTCCAACAC 
    TTCGGAAGTC GCAAAACAGG ACATGCGTCA CATAAACGAG ATGGATCGGG 
    TGACGATTGG AAGAAACCGA GCTGGTTTTA TTACCAAGAC ACTTGTCCTT 
    ACCAGACGTT CATTTGTTAA CATGTATAGA GATATTGGAT ACTATTGGTT 
    GCGGATGGCC ATTTATATTT CCATAAGTGC TTGCCTTGGC ACCATATTTT 
    ACAATATGGG CTATGGATCC GATTCAATTC GAGCTAGGTC ATCAATGTTA 
    ATGTTTATTA GCACCATGCT AACCTTAATG GCAATTGGAG GGTTCCCATC 
    CTTCGTGGAG GATATGAAGA TCTTTAGCAG GGAAAGGCTA AATGGACATT 
    ATGGTGTAAC CACATTTGTC ATCTCCAATA CATTGTCATC CACACCATAT 
    CTTCTTCTTA TTGCCATAAT ACCTGGTGCA ATTGCGTATT ATCTTAGTGG 
    CTTACAAAGG CAAATTGAAC ATTTTGTCTA TTTTACGTTA GTACTTTGTT 
    CATGCACAAT GCTAGTGGAA GGCCTGATGA TGATCGTAGC AACCATCGTA 
    CCAGATTTCC TAATGGGGAT CATAACAGGT GCTGGTATAC AAGGTATTAT 
    GATGCTCACA AGTGGATTCT TCCAACTTCC TAATAGCCTT CCAAACATAG 
    TATGGAAGTA CCCAATGTAC TACATCTCCT TTCACAAGTA TGCACTGCAG 
    GGGTTTTACA AGAATGAGTT CTTAGGTTTA GTACTCAACC TTGAAGGACC 
    CATAACAGTT AGTGGCGAGA AAGTTATTGC TGAGTTATTT CAAGTGGAAA 
    CAGGTCATTC AAAATGGGTA GATCTTGCAG TACTTTGTGG TATGATTATG 
    ACCTATAGAC TATTGTTTGT AGTGATTATC AAGGTTCTTG ATATAGTCAA 
    GCCCATACTT AAGGGGATGA CATTTAGGTG CAACACTAAA TGCATTCATG 
    GCATAGAGAA CCTTTGCGCC CCCTCGTGAT TCTTGTTGGA AAATAGTATA 
    TCTAATATTG TAATATTGCT TGGTGCACTT ATATACAGCG AGAAAAAAAT 
    GTAGTATTGT ATTTATATTA CTCAATATAA GTATGTGACT ATATTGTGAA 
    CAGATTCACT ACTGGAGAAA CGCTTTTTAG TCCCGGTTAG GAACCCCCTA 
    TAGTACCGGT TTTCTAACCG GGACTACGAA TCCGGGACTA AAAGATGTCC 
    AGTTTTAGTC CCGGTTGAAA TAAAGAGACT AAATCTTTAG TCCCT

    Gene models with high sequence identity

    1. AT1G17840.1 [+] show detail - white-brown complex homolog protein 11
      E-value: 1e-83; Score: 307.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER PLANT 3.7e-93
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER 3.7e-93
    HMMSmart ATPase, AAA+ type, core 0.0017
    Gene3D no description 3.1e-09
    superfamily PEP carboxykinase-like 1.8e-15
    superfamily P-loop containing nucleoside triphosphate hyd 5.1e-07
    HMMPfam ABC-2 type transporter 1.2e-32

    See the detailed result >

    AT1G17840.1

    Model type
    Protein coding
    Short Description
    white-brown complex homolog protein 11
    Curator Summary
    Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix.
    Computational Description
    white-brown complex homolog protein 11 (WBC11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, fatty acid transporter activity; INVOLVED IN: cutin transport, fatty acid transport; LOCATED IN: plasma membrane, external side of plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G21090.1); Has 367567 Blast hits to 338203 proteins in 4071 species: Archae - 6733; Bacteria - 294034; Metazoa - 7509; Fungi - 6244; Plants - 5251; Viruses - 10; Other Eukaryotes - 47786 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR