K34413

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34413

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34413

Determination of introduced cDNA(s)

  • J013001K01 - Rice Full-length cDNAs - Original: J013001K01

    full reading [+] show sequence

    Nucleotide sequence: J013001K01 - full reading 
    GGGAGGAATC CAGAAGCGGG GGGCTCCCAC CTTGTTGGCG ACGATGCTGC 
    GCGCGGGAGG GAGGCGGCTC TTGGCCCCCG GGCTCCGGCG GGTCCTCGGC 
    GGCGGGGCGG CCGCTCCGGT GGCCGTGGGC GGGGCGAAGG CGTACCACGA 
    GCGGGTGGTG GACCACTACG AGAACCCGCG GAACGTGGGG TCGTTCGAGA 
    ACGACGACCC CAGCGTCGGG ACGGGGCTGG TGGGGGCGCC GGCCTGCGGC 
    GACGTGATGA AGCTGCAGAT CCGCGTCGAC GAGAGCTCCG GCAAGATCGT 
    CGACGCATGC TTCAAGACCT TTGGGTGCGG ATCCGCCATC GCGTCCTCCT 
    CCGTCGCTAC TGAATGGGTA AAGGGCAAGC AAATGGAGGA AGTAGTGACT 
    ATAAAAAACA CTGAGATTGC CAAGCACTTG TCACTTCCAC CAGTAAAGCT 
    CCATTGTAGC ATGCTTGCTG AGGATGCAAT TAAAGCTGCC GTGAAAGACT 
    ATGAAGCAAA GAAGGCGAAG CTAGCACAAA AGGGTGAAGA GAAGGCTGCC 
    GAAGCATGAG TGCCAGAGGT TCTGTCATGA AGAATGTTGC AGTGCCCTGC 
    GTACTCGTAG TAAAGAACCT GTCATGAAGA AGTCTCTGCT CTGCTTCTTG 
    CTGGCGGGAA ATAGTGTGTA ACGCTCACAA ACTCTATGCA GCATGTATCA 
    TAAGGATGAA GGCAAACATT TTTGAATAAA TGTGCTGTCA TCTTGAAAGA 
    AAAAAAAAAG GTGTATGCGT GTGTATGGCC TAGTAATGAA CATATGGTAC 
    GGAATTACGG TCGCGAGATA AGGCACATTG TTTCT

    Gene models with high sequence identity

    1. AT4G22220.1 [+] show detail - SufE/NifU family protein
      E-value: 3e-58; Score: 222.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam NIF system FeS cluster assembly, NifU, N-terminal 2.1e-54
    superfamily SufE/NifU 4.4e-45
    Gene3D no description 3.4e-45
    HMMTigr ISC system FeS cluster assembly, IscU scaffold 5.4e-77
    HMMPanther NIF system FeS cluster assembly, NifU, N-terminal 1.1e-71

    See the detailed result >

    AT4G22220.1

    Model type
    Protein coding
    Short Description
    SufE/NifU family protein
    Curator Summary
    Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.
    Computational Description
    ISU1; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, N-terminal (InterPro:IPR002871), ISC system FeS cluster assembly, IscU scaffold (InterPro:IPR011339); BEST Arabidopsis thaliana protein match is: ISCU-like 3 (TAIR:AT4G04080.1); Has 5453 Blast hits to 5453 proteins in 1998 species: Archae - 110; Bacteria - 3654; Metazoa - 148; Fungi - 154; Plants - 89; Viruses - 0; Other Eukaryotes - 1298 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR