K34525

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34525

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34525

Determination of introduced cDNA(s)

  • J013130E06 - Rice Full-length cDNAs - Original: J013130E06

    full reading [+] show sequence

    Nucleotide sequence: J013130E06 - full reading 
    GGGGACACTG TTCGAATTGC TTGGGAACTC TTCCATGGAA TCTGGATGGA 
    TACCTTATTG AGTAGTAAAT TTCTTAATAC AGCTCGCTAT CCAGATAGTG 
    CTAGCTGTGA TTGTTTGGTG ATCAATCTAT TGGGATTGTG CCGACTGGAG 
    CTGTTCGACA TTGCTTTGGT CTTTTGTTGA TTTGCCTGGA GTTCGGCAGT 
    ATACAGCAAC CCTGGAGTGC ATGCAGTGGT TTCCTCATTT TTTAGGACCT 
    GACTGCATTC TGTAGTGAGA ACTATCCTGC TAAATGCATA ATACTTGCAG 
    GTGTTTTCTG TTGTATTGGC AACGTGATAG TTTTTGTGGT GCAAAACATT 
    CAAGATGGGC GCCATGGACG TACAACTTGA GTCTACTGCT GTTCAACGTG 
    GACAAGCTAA GATAAATGTG GAGGAACATG CTCTAGTTTC TCTGTTGTCT 
    GATGAGAAGT ACGCAACTGA AAAGACCGAA GATGTGGACC CTGATGATTA 
    TGAGAAACTT GAGGAAGGGA TAATGCAGTA TGGGTGTGCA CATTATCGAA 
    GAAGGTGCCG CATTCGAGCT CCATGTTGCA ACGAGATTTT TGATTGTCGG 
    CATTGCCACA ATGAAACAAA GAATTCAATT AAAATTGATG CTGTGAAGAG 
    GCATGAACTC CCACGCCATG AAGTGCAGCA GGTTATATGC TCGTTGTGTG 
    GCACGGAACA AGAGGTACGG CAAGTATGTA TCAGTTGTGG TGTATGCATG 
    GGGAAGTACT TCTGTGAAGT GTGCAAGCTC TTTGATGATG ATGTTTCAAA 
    ACAGCAATAT CATTGCAATG GTTGTGGAAT ATGCAGAATT GGTGGCAAGG 
    AGAATTTCTT TCACTGCTCA AAATGCGGAT GCTGTTATTC TATAGTATTG 
    AAGAACAGTC ATGCATGTGT TGAAGGAGCG ATGCATCATG ACTGTCCAAT 
    CTGCTTTGAG TACCTTTTTG AATCAACCAA TGATGTTTCC GTCTTGCCCT 
    GTGGTCATAC CATTCATGTC AAGTGCTTGC GAGAAATGGA GGAGCACTGC 
    CAATTTGCTT GCCCGCTTTG CTCTAAATCT GTCTGCGACA TGTCGAAGGC 
    ATGGGAGAGA TTGGACGAGG AACTAGCAAC GATATCTGAC ACCTGTGACA 
    ATAAAATGGT GCGCATATTG TGCAACGATT GTGGGGCAAC ATCAGAGGTG 
    CAGTTCCATT TGATTGCGCA CAAGTGCCAG AAGTGCAAGT CCTACAACAC 
    CCGCCAGATC TGAAGTGGCG AAGTTTTGAT GTGATTCATT TTGTATGGGA 
    AGAGAGCCCT GGGGGATGCT CATTTTGCAA CACAAATCCC GCTAACGCCT 
    CTGGGAATCT GATGAGCTCT CGGTCGTTTT CTTGCTCATT GGATGCCTCA 
    GCCGAGGCAA ATCACTCGCA TCTGAAATTC ATCTATGAAG TGGATGCTGT 
    TCCCTCCTGT GTTCAATTTA TTACCTCACC ATGTCGCAGA CTCAGAGTCC 
    TGTTCAGCTT AAGTTTCTAC TAGCACTAGC CGAGATAATA AGTGCACGTC 
    TACTCAAGCT TCTGGGCATA AATGGTGGCT AGCTTGTGTG TTATGGTGTG 
    TACTTGTTGA GTCTCGGGCA AACACTGTAA CGGTTAGTGG CATAGTATTA 
    CTTCTTGCTC GTGTGCGTGT GTAGTAGGAT GGCGGATTGC AGGACGTGGG 
    TGTTATTTAC TGGTAGGAAC TGTGGTACTT GCAGTAGCCA CCATTTCTCA 
    TGTTCAATGC CGGTCCCATA TGCCGGTCTT GTTCAGTTCC TATACCTTGC 
    TCGGTTGAGA AAAATGGCAA ATCTACCTCA GTTCATTTTG TTC

    Gene models with high sequence identity

    1. AT5G25560.1 [+] show detail - CHY-type/CTCHY-type/RING-type Zinc finger protein
      E-value: 5e-123; Score: 438.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 11.943
    ProfileScan Zinc finger, CHY-type 26.125
    ProfileScan Zinc finger, CTCHY-type 34.79
    HMMSmart Zinc finger, RING-type 0.0000033
    HMMPanther RING FINGER AND CHY ZINC FINGER DOMAIN CONTAI 4.8e-114
    HMMPfam Zinc finger, CHY-type 1.4e-16
    HMMPfam Zinc finger, C3HC4 RING-type 0.000016
    superfamily RING/U-box 0.000000000000095

    See the detailed result >

    AT5G25560.1

    Model type
    Protein coding
    Short Description
    CHY-type/CTCHY-type/RING-type Zinc finger protein
    Computational Description
    CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR