K34619

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34619

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34619

Determination of introduced cDNA(s)

  • J013069I08 - Rice Full-length cDNAs - Original: J013069I08

    full reading [+] show sequence

    Nucleotide sequence: J013069I08 - full reading
    GATATATAGG TAGAGAGCAG AGCATATGCA GAGCAGGGGA AGGGGCGAAG 
    CGTACTCCTT CCCTGCAGCT GCTTCCATCA ATACAATACA ACTAGTGATT
    TCGTTGCAGT GATCCTTTCT GTCGATGGCG CAGCAGCAGG GGCAGGGGGC
    GGGTACTACT ACAGTGGCGA TGATGAGCCG GAACCCGAGC TACTACTACT
    CCGGCGAGGG TGAGCTGAGC CTGGCGGTGC AGCGGCAGGA CTCGCTGTAC
    AGGGACGCGA GCCGCGCCGG GCAGCATGAG CAGGCGCATG GCGAGGGGTG
    GGCGCGCACG CTGCGTCTGG CCTTCCAGTG CTTCGGCGTC CTCTACGGCG
    ACATCGGCAC CTCCCCACTC TACGTCTACT CCACCACCTT CGACGGCGGC
    ATCCGCCACA CCGACGACCT CCTCGGCGTC CTCTCCCTCA TCATCTACAG
    CTTCCTCCTC TTCACCATCA TCAAGTACGT CTACATCGCC CTCCGCGCCA
    ACGACGACGG AGACGGCGGC ACTTTCGCCC TCTACTCCCT CATCTCCCGC
    CACGCCAAGG TCAGCCTCGT CCCCAACCAG CAGGCCGAGG ACGAGCTCCA
    CCTCCACATC AGCAAGTCCT CCTCGCTCCG CCGCCCCTCC GTCCAGCGCC
    TCGCCTCCAC CGCCGAGGAG CGCGCCCAGT GGGTCAAGGA CCTCCTCGAG
    AACAGCCGCC CCGTCCGCAT CTCCCTCTTC CTCCTCACCA TCCTCGCCAC
    CGCCATGGTC ATCAGCGACG CCTGCCTCAC GCCCGCCATC TCCGTCCTCT
    CCGCCGTCGG TGGCCTCAAG GACAAGGCGC CACACCTCAA CACTGGTGGT
    GTGGGTGACG GTGGGCATCC TGGTGATGCT GTTCGCGGTG CAGAGGTTCG
    GGACAGACAA GGTGGGGTAC CTGTTCGCCC CCGTCGTTTT GCTGTGGCTC
    CTCCTCATCG GCGGCGTCGG GGTGTACAAC CTCGCCGCCC ACGACGTCGG
    CGTCCTCCGC GCCTTCAACC CAAAGTACAT CCTCGACTAC TTCCGCCGCA
    ACGGACGCCA CGGCTGGGTC TCCCTCGGCG GCGTCCTCCT CTGCTTCACC
    GGCACCGAGG CACTCTTCGC CGACCTCGGC TGCTTCAGCA TCCGCTCCAT
    CCAGCTCAGC TTCGCCTTCG GCCTCGTCCC GGCCGTGCTG CTGGCCTACG
    CCGGGCAGGC CGCCTACCTG CGCGTGTACC CGGACCACGT CGGCGACGCC
    TTCTACGCGT CGACGCCGCA GGTGCTGTTC TGGCCAACCC TGGTGCTGGC
    GCTGGCGGCG TCCGTGGTGG GCAGCCAGGC CATGATCTCC TGCGCCTTCG
    CCACCATCTC CCACTCGCAG GCCATGGGGT GCTTCCCGCG CGTGAAGGTG
    GTGCACACGT CCAGGCAGTA CCAGGGGCAG GTGTACATCC CGGAGATCAA
    CCTCCTGCTG GGCGCGGCCG CCTGTGTGGT GACGGTGGCG GCGCGGGACA
    CGGTGGTGAT CGGCGAGGCG CACGGCATCT GCGTGGTGCT GGTGATGCTC
    ATCACCACGC TGCTGCTGAC GGTGGTGATG GTGCTGGTGT GGCGGGTGAA
    CATCGGGTGG GTGCTGGTGT TCGCCTGCGT CTTCGCCTCC ACCGAGTCGG
    TGTACCTGAC GTCGGTGCTC TACAAGTTCG CGCACGGCGG GTACATACCG
    GTGGCCATGT CGGCGGTGCT GATGGGGGTG ATGGGGGTGT GGCACTACGT
    GCACGTCAGG AGGTACAAGT ACGAGATGGA GAGGACGGTG TCGACGGAGA
    GGGTGAGGGA GCTTGTGTCT CGGAGGGAGC TGCAGAGGGT GCCCGGTGTG
    GGGCTCTTCT ACACGGACCT CGTGCAGGGG ATCCCCCCGG TGTTCCCTCA
    CCTCATCGAC AAGATCCCCT CCATCCACAC CGTCCTCCTC TTCGTCTCCG
    TCAAGCACCT CCCCGTCCCG CACGTCGACC CCTCGGAGCG CTTCCTCTTC
    CGCCAGGTGG AGCCGCAGGA GCACAAGCTC TTCCGCTGCG TCGCGCGCTA
    CGGCTACCGC GACCGCCTCG AGGACGCCCG CGACTTCGTC GCCAACCTCG
    TGGAAAGGCT GCAGTACTAC GTGCGGGACG TCAACCTGTA CGGCGCCGCC
    GCCAATAATA AGGTGAGCTA CCCGAGCTCT CGTTGCGACA GCATGGGCAT
    ACCCAAGTCG GCTTCCTACG CGGAGAGGCT GCAGCTTCAG AGGGCCAGGT
    CGGTGGCCAT GCTCCACTCG CATTCTCAGC ATCAGCAACA GCCTCTGCCT
    CAGCAGCTGG GCCAGCTGCT TCAGTACTCG GCATCCACGG GAGAGCAGCA
    GCGCCGCTCC GTTTACGCGG AGGAGATGCT TACTCCGGCG GAGTCGTTCT
    CGGAGATGGG GACGATGGCG GCGAGCGGGC GGCAGCTGAT GGCGGTGGCG
    GTGAAGATGA GCCTGGAGGA GATGGCGCGG ATCGAGGAGG AGCAGCGGTT
    CATACAGAGG GAGATGGAGA AAGGGGTGGT GTTCATCCTC GGGGAGAGCG
    AGGTGGTGGC GAGGCCTCAC TCCTCCCTCC TCAAGAAGCT CGTCGTCAAC
    TACGCCTACT CCTTCCTCCG CCGCAACTGC AGGCAGGGCG ACAAGATGCT
    CGCCATCCCC AGGAGCCAAC TCCTCAAAGT CGGCATGTCC TACGAGATCT
    GATCGATCTC TCATGCATCC CCCATCCATT CCTTCATAAG CAAACCTTCC
    TTAATTATTG CTTTCATTTC TTCTTCCTTC TTCATTATTT CAATCTCGAT
    CCATCTACTC TACTACTAGT TCTTCATTTC TTCTCTGCTA CTCCAGTATA
    CTCAACTGGT TATGGTTAGT ACTAGCAGCT AAGCTAAGCT AAGCTAGCTT
    CATAACTATA AGTGCCTTTA TTGATGCATG CATGCCAGTA TATATAGTGA
    TCATATATAT ACATACACAT ATACTAGCGG AGGAGTATGT AACTAGTTGC
    TAGTATTGCT GATTGATAAT TAATTGTACA ATTGGATGCA TGGGATGGGA
    GACCACTGAA TTGATCCAGG TTCTTCCTAC ATGTTTGTAT GTATGTATGC
    TTGTAGAAGC TTGCACAGAT ATATTGATCA TATGATTGTC AATTCCTTGT
    TGC

    Gene models with high sequence identity

    1. AT4G13420.1 [+] show detail - high affinity K+ transporter 5
      E-value: 2e-168; Score: 185.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam K+ potassium transporter 1.5e-59
    HMMPfam K+ potassium transporter 1.1e-199

    See the detailed result >

    AT4G13420.1

    Model type
    Protein coding
    Short Description
    high affinity K+ transporter 5
    Curator Summary
    Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels.
    Computational Description
    high affinity K+ transporter 5 (HAK5); FUNCTIONS IN: potassium ion transmembrane transporter activity, potassium:sodium symporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: Potassium transporter family protein (TAIR:AT1G60160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR