K34636

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34636

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34636

Determination of introduced cDNA(s)

  • J013075A21 - Rice Full-length cDNAs - Original: J013075A21

    full reading [+] show sequence

    Nucleotide sequence: J013075A21 - full reading 
    GATTGACTAG GGGGTGGGGT GGTACGGAAA CCCTATCACC AGGGAAGAGG 
    GGGGCGGGGG CGCACAGCAA ATTTCCTCCT AATCCGTTTC TCCCTTGGGC 
    GATGGCTTCC ATCGCTATGG CTGCCTCGTT GCGAACCTTC CTCCGCCCTC 
    ACCGTTGCCG TCTCCTCCTC CGCCAGAGCC GCAGCCTCTC CGCCAGCGCC 
    GCCCCGGCCG GTGCCGCCGC CGCATCCACG GTTATCCGGC GCAGCGTAGT 
    GGAGGTGCTC CGGGAGCGGG GGCTCGTGGA GGCCACCACT TCTGAGTCTC 
    TGGGGTCGGC TTCAGCGAGC CCTAGGGAGC TCAAGGCGTA CTGCGGCTTC 
    GACCCCACGG CGGAGAGCCT CCACCTCGGG AACCTCCTCG GGCTCGTCGT 
    GCTCTCCTGG TTCCGCCGCT GCGGTCACAA CGCCGTCGCG CTCGTCGGCG 
    GCGCCACCGG CCGTGTCGGT GACCCCTCTG GAAAGAGCGC CGAGCGGCCC 
    GAGCTCGACC TCGCCGCCGT CGAGACCAAC TCCAACGCTA TCAAATCGCT 
    CATCGGCCAG ATCCTTGACC GTGCACCCGA GCCCTCCCAA CATTCGCAAT 
    CCGGTAAAAA CTTGAACTTG GAGCAAAATG AGCAGGCTTT GGTCAATTCG 
    GGAGAAAAGA TGGGTTCTTT TCAGATCCTT GATAACTATG ACTGGTGGAA 
    GGACATCACG CTGCTGGATT TCCTCAAGGA GGTGGGGAGA TTCGCTCGTG 
    TTGGGACGAT GATAGCCAAG GAGAGTGTCA AGAAGCGGCT TATGTCCGAG 
    GACGGAATGA GCTACACTGA GTTCACCTAC CAGCTGTTGC AGGGCTATGA 
    CTTCCTGTAC ATGTTCCGCA ATATGGGTGT TAATGTGCAG ATTGGAGGAA 
    GTGATCAGTG GGGAAACATC ACAGCGGGGA CTGAGTTAAT TCGGAAGATT 
    TTACAGGTTG AGGGGGCACA CGGCCTGACA TTCCCACTAC TGCTGAAGAG 
    TGATGGGACG AAGTTTGGCA AGACGGAGGA TGGAGCAATC TGGCTTTCGC 
    CCAAGATGTT GTCACCATAC AAATTCTATC AGTACTTCTT CTCAGTGCCA 
    GATATTGATG TCATAAGGTT TATGAAGATA CTGACATTCA TGAGCCTGGA 
    TGAGATTCAG GAGCTGGAAG AGTCGATGAA GAAGCCTGGC TATGTGCCGA 
    ACACAATTCA GAGGAGGCTT GCAGAAGAGG TCACACGTTT TGTGCATGGT 
    GAGGAGGGAT TGGAGGAAGC GTTGAAAGCC ACGGAAGCCT TACGGCCTGG 
    GGCACAGACT CAGTTGGATT CACAAACAAT TGAGGGGATA GCAGATGACG 
    TACCATCATG CTTTTTGCCA TATGGCCAAG TTTTGAAGTC TCCCCTGGTT 
    GATCTAGCAG TCTCCACAGG TTTGCTTGCT AGCAAATCAG CGGTTAGGCG 
    GCTTATTAAG CAAGGGGGGC TATACTTAAA TAACATAAGA ATTGATAGCG 
    AGGATAAGTT GGTTGAGGAA GGTGATGTAG TTGATGGGAA AGTGCTGTTG 
    CTATCTGCTG GAAAGAAGAA CAAGATGGTT GTGAGGATAT CTTGATTGTT 
    TTAATTTGTT CGTTGCATTT AAATTTTTTT ATCATTGAGG AGCAAAGGAA 
    TGAGACGAAG TCTTGTATTA AGAATTTAAG ATTAATTTTG ATGAACATCG 
    GCATTAATTT TAATGCCACT TTACTGGAAT GATTAAACTG

    Gene models with high sequence identity

    1. AT3G02660.1 [+] show detail - Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
      E-value: 7e-162; Score: 567.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Aminoacyl-tRNA synthetase, class Ib 4.4e-70
    HMMPfam RNA-binding S4 0.00000044
    HMMPanther Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial 2.8e-147
    ProfileScan RNA-binding S4 12.42
    HMMTigr Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial 6.7e-100
    HMMSmart RNA-binding S4 0.000035
    PatternScan Aminoacyl-tRNA synthetase, class I, conserved site 0
    FPrintScan Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial 0.0000025
    FPrintScan Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial 0.0000025
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 9.3e-78
    Gene3D no description 1e-32
    Gene3D no description 0.000036
    HAMAP SYY_MF_02006 39.375
    superfamily Nucleotidylyl transferase 3.6e-93
    superfamily Alpha-L RNA-binding motif 1e-18

    See the detailed result >

    AT3G02660.1

    Model type
    Protein coding
    Short Description
    Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
    Computational Description
    EMBRYO DEFECTIVE 2768 (emb2768); FUNCTIONS IN: RNA binding, tyrosine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), RNA-binding S4 (InterPro:IPR002942), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 9022 Blast hits to 9013 proteins in 2715 species: Archae - 16; Bacteria - 5542; Metazoa - 116; Fungi - 145; Plants - 38; Viruses - 0; Other Eukaryotes - 3165 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR