K34638

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34638

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34638

Determination of introduced cDNA(s)

J023026N03 - Rice Full-length cDNAs - Original: J023026N03

full reading [+] show sequence

GCCCCCCTCC GCCTCGCACT CTCTCTCGCT ATAGCCTATA GCGTCTCTCC 
CGAAGGCTCG AGACACCACA CCTCTCTTCT CTTTGGCTCC TCTCATCGCT 
GCATTGCGAT CCCAAGAGCT GTGAGCTTTA GGAGCTTGTT CATCACGACC 
TGAAAATCAT GGAGTTCGAA GACCGCTGCC ACAAGGTCCA GGAGCCCAAA 
TTCGACTGCC TGCTGTTTGA CCTCGATGAC ACTCTGTACC CACTGAGCTC 
GGGGATCGCG TCCCATGTCA AGAAGAACAT TGGAGATTAC ATGGTTGAGA 
AGCTGGGTAT TGAGGAGAGC AAGATTGAGA ACCTTGGCAA TCTGCTGTAC 
AAGAACTACG GCACGACGAT GGCCGGACTC AGGGCAATAG GCTACAGCTT 
CGATTACGAT GAGTACCACA GTTTTGTCCA TGGAAGACTG CCCTACGAGA 
ACATCAAGCC GGACCCTGTC CTGAAGCACA TTCTCAAGAA CCTGCGCATC 
CGCAAACTCA TATTCACCAA CGGCGACAAG GACCACGCCG TGAGAGCCCT 
CAAGAGGCTG GGGCTGGAGG ACTGCTTCGA GGGGATCATC TGCTTCGAGA 
CCCTCAACCC GCCGTGCCCG TCGCCGCCGT GCGACGGGGA GGCCAGCATC 
TTCGACATCG CCGGACACTT CTCCATGCCC GGCGCCGCCG CCGACGAGCT 
TCCCAGGACA CCCGTCCTCT GCAAGCCCAA CGTCGACGCC ATGGAGGAGG 
CCCTCAGGAT CGCCAACGTG AACCCTCACA AGGCGATTTT CTTCGACGAC 
AGCGTGAGGA ACATCCAGGC GGGGAAGAGG ATCGGGCTCC ACACGGTGCT 
GGTGGGCACG CCGCAGCGGG TGAAGGGCGC GGACCACGCG CTGGAGAGCA 
TCCACAACAT CAGGGAGGCG CTGCCGGAGC TGTGGGAGGA GGCCGAGAAG 
GCGGAGGACG TGCTCATCTA CTCCGACCGC GTCGCCATCG AGACATCGGT 
GACCGCGTAG GCCACACCTA CTGTCTCTCC CGACTCCGGC GAATCGCTCA 
GAACGAGCAA CCATCCATCC ATCCATGTCC ATCCCTGGCC GGGCAGGTGA 
TCATCAGGTG GGAATTCAGA ATTGGCCGGG ACAACAATAC GTTCCAAGAA 
AAAAAGAGGA GGGTGTTCCG TGGAAGTTCA GGATTCAGAA TGTAACAGCA 
ATGTTGGAAC GGGTCCTGTA GTATATATAT GTATCGGTCA GATCTTTGCA 
TGTAAATTAG TACTCCTAGA AGCAATAATA ATAATAATTA ATAAAGAGAA 
TGGGGGTTAT TTATCACTTC TTGATTGTGT ATTTATCTCT CGTGTTTAAC 
TGAAGCTCTG AAGGATTTTT ATTAGCCC

Gene models with high sequence identity

AT5G02230.2 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
E-value: 2e-90; Score: 330.00

InterPro Scan Digest

Program	Description	E-value
superfamily	HAD-like	3.7e-30
HMMTigr	Pyrimidine 5-nucleotidase	6.2e-93
HMMTigr	HAD-superfamily hydrolase, subfamily IA, variant 3	1.6e-08
Gene3D	no description	2.1e-06
HMMPanther	2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2	4.4e-07
HMMPfam	Haloacid dehalogenase-like hydrolase	5.2e-09

See the detailed result >

AT5G02230.2

Model type: Protein coding
Short Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G59480.1); Has 2249 Blast hits to 2246 proteins in 493 species: Archae - 16; Bacteria - 743; Metazoa - 0; Fungi - 143; Plants - 201; Viruses - 0; Other Eukaryotes - 1146 (source: NCBI BLink).
Link: InterPro Scan - TAIR