K34648

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34648

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34648

Determination of introduced cDNA(s)

  • J013058G08 - Rice Full-length cDNAs - Original: J013058G08

    full reading [+] show sequence

    Nucleotide sequence: J013058G08 - full reading
    GTTAGTGAAG TTTATTGAAT CATGTTTATA CTTTATATTT TTTTTCCAAG 
    CCTAGTGATC TTTGTTACTT GCATTCACAG TTCTCAGTAA CAGAGCATTT
    TAGAGATGGG AATATTCGCC CCAAACCCCA GCCTGGAGTA TTTTTCTTCT
    ATGATTTCTC ACCCATAAAG GTAGTAACAA TGGAGAGAAA TTCGTATGTA
    GTCATGTTCA TTTTTCTCTT TTTATGATTC TATCTTAGCT TGCTCTACTC
    ATCTTCTCAA CCTGTGGATA TGTGTTGCCA AGCTCATCTG TTGAATGGCT
    GGCTGTGTTG GTGTGACCAT TCTTGCTGCA CATGCAGAAT GCTCCAAATT
    CACCATCTGT TATTATTCAG TACTATTTAA TTACTTTGGA CACAAGAGAA
    GTCTACAATA CCTTTGTTTC ACCTTTATCT ATTCTGACAC TGCAGGACCA
    AACTGGAATT TGTAGGCTTT AGGTCATGGA GAGTTTCTAA AGTTAGTTAT
    TATACTAGTC AGTAGCTAAA AGAATCAGTT CATTGATGAG ATATATCTGT
    TAGGAGTATC CTAGCATAAA ATTTGGTATT ATCCTTTTAT TATTTTTATT
    ATTTGCTGAA TGGCTCCAAA AATGTCTGCA TATGCATCGT AACACTTTGA
    ATACAAAATT GACAGTGCAT GTCTATACTC ATTCAAAAGC CTCTAGTGGT
    GGTGGCAGGG AATTTGCCAC CCCACTATTG CTTTTTGCAG TTTTTACAAA
    TTGTCCCCTG ATATTTTTCT AATATTGTGG AATAGTTCAA TATTTGGTTC
    AAACAAGTGA ATAGCAGATA ATGAAATAAA CAAACAATTG ATACTAAGAT
    ATTTGATAAA ATATATATTT TTCTTACATA TTATGATATT GTTTTTCTTC
    TGCCCATAGC AAAGCTTGGG CATTTTGCTA GTACTCAAAA GTCAAAACTT
    ATACATGTGG ATAACATACA GTTTCGTATC AATATAACGA TTAACTAATT
    CTCATATTCT CTTATCAGAT TGAAAGGTAC TCCTTTTAAG TTTTAACTCT
    TTAGTTCTGT GACCCACTAA AATCTTAGTT CTCCACCTTA TGTTTTTGCA
    GGTAATATTT ACAGAAGAAA ATAGTTCCCT GCTCCACTAT CTGACGAACC
    TATGTGCTAT AGTGGGAGGG GTTTTCACCG TCTCCGGCAT CATTGACTCG
    TTCATATATC ACGGGCAGAA GGCACTCAAG AAAAAAATGG AGCTAGGCAA
    GTACAGATGA TTTACCTGAA ACATGGACTG GCCCTCATGT TCCCCAAGTT
    CCCAAGTTCC GTGGCTTGTA AAGGATCCAT TGCTTAAGAC CTGAAGACGT
    TGCTTTGCTG GAAGGTTTTG CTAAGGCCAT CAGAATTGAC GATATTGCAC
    ATTAGTTGAT CAAAAACTCG TTTACATGTA AAAAAAGACA ATATCATAGC
    GTTGGGCCTG GGGGAGTGCT TTGATGTCTC AGTGAGACTC TTTTTGAGTG
    GCCAAAACTG GCGAAATGAG ATGGATAGAT TAAATC

    Gene models with high sequence identity

    1. AT1G36050.2 [+] show detail - Endoplasmic reticulum vesicle transporter protein
      E-value: 1e-18; Score: 91.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF1692 0.000000014
    HMMPfam Protein of unknown function DUF1692 0.0000000045
    HMMPanther SEROLOGICALLY DEFINED BREAST CANCER ANTIGEN N 0.000000077
    HMMPanther SEROLOGICALLY DEFINED BREAST CANCER ANTIGEN N 0.000000077
    HMMPanther SEROLOGICALLY DEFINED BREAST CANCER ANTIGEN N 2.6e-24
    HMMPanther SEROLOGICALLY DEFINED BREAST CANCER ANTIGEN N 2.6e-24

    See the detailed result >

    AT1G36050.2

    Model type
    Protein coding
    Short Description
    Endoplasmic reticulum vesicle transporter protein
    Computational Description
    Endoplasmic reticulum vesicle transporter protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Endoplasmic reticulum vesicle transporter protein (TAIR:AT1G22200.1); Has 1261 Blast hits to 1092 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 439; Fungi - 275; Plants - 277; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033072O04 - Rice Full-length cDNAs - Original: J033072O04

    full reading [+] show sequence

    Nucleotide sequence: J033072O04 - full reading
    TTGTGTGTGC GCGAAGCAGC CGCCGCCGCG CGGATGTTGT GTGCTGTTCG 
    CGTACTCTCC CATCCGTGGC CGTAATGGCT CGATGTGGTT TGGAATTCGA
    GGAGTTGGTT CTTGCCAACA AGATCAAAGT CGGATTTCGA GTTGTCGATG
    GGGATGGGGA TTTAGAGTAA GATTTGAATT CAATGATGCG GTGGGCGTGT
    TCCTGCTGCT GCTGCATGCT TGAATGTTTG GAATATTTCC AGGGGCACCT
    GACCGCGCTC TTGGTAATTT CTAGAAGAAG GTGCCCTTTT AGGTAGACAG
    GTTTTGCGGT GTGTCAGGGT AACGAACTAA AGATGGGCAT GTTGCGATGG
    GCATTGACGC TAATGGTGAT GTATGCTGCG CGCGATTTTT CTTTTCTTTT
    TCTTTTTCCT TTTCGGGTGT GAGATTCCTG AAAAGTTCAG GAATGCTTTT
    GGCTGAGTTC CTGCGTCTCT GAGGAAGATA AATTAGTTTA TTTTTTTCTG
    CTATTACTTG GATTTATGTG CTGCTATCAC TGTTGGTTCG TGAAGGGTAA
    GTTTTTGTGT TGTTGGCTCT GCATGTTGGA TCATGCGTGC AAAATTAGGT
    CGTCACAAGG ATTATGCCGT TTTCAAGTTA CCTTTTGAGT AAAGTCTGTT
    GTTGCAAAGG TTCTGTTTTA TTTGGCCAGC ATGGCCTTAC ATTACTTTGG
    AGTTTGGAGA ACAAGAGGTT ACAAGTTGTC GAATTTTTAT GCTCTTTTTG
    TTTGGTGCAA TTTGTTAGTG TTTATTTTTT TAAAAAAATT CTGGTAGTGA
    GAAGGTTCTT TCATAAAATG TTTTTGCAGG GTCATATTTT TATTCAGCAA
    CAGAGACTAA GCTAGTGGTT GACACATCAA GAGGGGAAAG GCTACGAGTT
    AATTTTGACG TAACTTTTCC GAGTGTTCCC TGCACCCTTC TCAGTGTTGA
    TACCATGGAT ATTAGTGGAG AGCAGCATCA TGACATTAGG CATGATATAG
    AAAAGAGGCG ATTAGACGCA CATGGTAATG TCATTGAGGC TAGAAAAGAA
    GGCATTGGTG GAGCAAAGAT AGAGAGTCCA TTGCAAAAAC ATGGAGGAAG
    ACTCAGCAAA GGTGAAGAAT ACTGTGGCAC GTGTTATGGT GCTGAGGAGT
    CGGATGAACA ATGCTGTAAT TCTTGTGAAG AAGTTAGGGA AGCATATAAG
    AAGAAAGGAT GGGCCCTTAC AAATCCTGAT CTGATTGACC AGTGCACCAG
    AGAAGATTTT GTGGAAAGAG TTAAAACTCA ACAAGGTGAA GGTTGTAATG
    TACATGGCTT TTTAGATGTC AGCAAAGTTG CAGGGAACTT ACACTTTGCT
    CCAGGCAAAG GATTTTATGA GTCAAATATA AATGTGCCTG AGCTGTCGGC
    ACTTGAGCAT GGTTTCAACA TCACACACAA AATAAATAAA CTGTCTTTTG
    GGACAGAATT CCCTGGTGTT GTTAATCCAC TTGATGGTGC TCAGTGGACA
    CAACCAGCAT CAGATGGGAC ATACCAATAC TTCATAAAAG TTGTTCCTAC
    AATTTACACT GATCTAAGAG GGCGCAAGAT TCATTCCAAC CAATTCTCAG
    TAACAGAGCA TTTTAGAGAT GGGAATATTC GCCCCAAACC CCAGCCTGGA
    GTATTTTTCT TCTATGATTT CTCACCCATA AAGGTAGTAA CAATGGAGAG
    AAATTCGTAT GTAGTCATGT TCATTTTTCT CTTTTTATGA TTCTATCTTA
    GCTTGCTCTA CTCATCTTCT CAACCTGTGG ATATGTGTTG CCAAGCTCAT
    CTGTTGAATG GCTGGCTGTG TTGGTGTGAC CATTCTTGCT GCACATGCAG
    AATGCTCCAA ATTCACCATC TGTTATTATT CAGTACTATT TAATTACTTT
    GGACACAAGA GAAGTCTACA ATACCTTTGT TTCACCTTTA TCTATTCTGA
    CACTGCAGGA CCAAACTGGA ATTTGTAGGC TTTAGGTCAT GGAGAGTTTC
    TAAAGTTAGT TATTATACTA GTCAGTAGCT AAAAGAATCA GTTCATTGAT
    GAGATATATC TGTTAGGAGT ATCCTAGCAT AAAATTTGGT ATTATCCTTT
    TATTATTTTT ATTATTTGCT GAATGGCTCC AAAAATGTCT GCATATGCAT
    CGTAACACTT TGAATACAAA ATTGACAGTG CATGTCTATA CTCATTCAAA
    AGCCTCTAGT GGTGGTGGCA GGGAATTTGC CACCCCACTA TTGCTTTTTG
    CAGTTTTTAC AAATTGTCCC CTGATATTTT TCTAATATTG TGGAATAGTT
    CAATATTTGG TTCAAACAAG TGAATAGCAG ATAATGAAAT AAACAAACAA
    TTGATACTAA GATATTTGAT AAAATATATA TTTTTCTTAC ATATTATGAT
    ATTGTTTTTC TTCTGCCCAT AGCAAAGCTT GGGCATTTTG CTAGTACTCA
    AAAGTCAAAA CTTATACATG TGGATAACAT ACAGTTTCGT ATCAATATAA
    CGATTAACTA ATTCTCATAT TCTCTTATCA GATTGAAAGG TACTCCTTTA
    AGTTTTAACT CTTTAGTTCT GTGACCCACT AAAATCTTAG TTCTCCACCT
    TATGTTTTTG CAGGTAATAT TTACAGAAGA AAATAGTTCC CTGCTCCACT
    ATCTGACGAA CCTATGTGCT ATAGTGGGAG GGGTTTTCAC CGTCTCCGGC
    ATCATTGACT CGTTCATATA TCACGGGCAG AAGGCACTCA AGAAAAAAAT
    GGAGCTAGGC AAGTACAGAT GATTTACCTG AAACATGGAC TGGCCCTCAT
    GTTCCCCAAG TTCCCAAGTT CCGTGGCTTG TAAAGGATCC ATTGCTTAAG
    ACCTGAAGAC GTTGCTTTGC TGGAAGGTTT TGCTAAGGCC ATCAGAATTG
    ACGATATTGC ACATTAGTTG ATCAAAAACT CGTTTACATG TAAAAAAAGA
    CAATATCATA GCGTTGGGCC TGGGGGAGTG CTTTGATGTC TCAGTGAGAC
    TCTTTTTGAG TGGCCAAAAC TGGCGAAATG AGATGGATAG ATTAAATC

    Gene models with high sequence identity

    1. AT1G36050.2 [+] show detail - Endoplasmic reticulum vesicle transporter protein
      E-value: 6e-114; Score: 409.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF1692 2.7e-65
    HMMPfam Protein of unknown function DUF1692 0.000000014
    HMMPanther SEROLOGICALLY DEFINED BREAST CANCER ANTIGEN N 6.9e-128
    HMMPanther SEROLOGICALLY DEFINED BREAST CANCER ANTIGEN N 6.9e-128
    HMMPanther SEROLOGICALLY DEFINED BREAST CANCER ANTIGEN N 2.6e-24
    HMMPanther SEROLOGICALLY DEFINED BREAST CANCER ANTIGEN N 2.6e-24

    See the detailed result >

    AT1G36050.2

    Model type
    Protein coding
    Short Description
    Endoplasmic reticulum vesicle transporter protein
    Computational Description
    Endoplasmic reticulum vesicle transporter protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Endoplasmic reticulum vesicle transporter protein (TAIR:AT1G22200.1); Has 1261 Blast hits to 1092 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 439; Fungi - 275; Plants - 277; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR