K34703

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34703

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34703

Determination of introduced cDNA(s)

  • J013065E10 - Rice Full-length cDNAs - Original: J013065E10

    full reading [+] show sequence

    Nucleotide sequence: J013065E10 - full reading 
    ACCCACTCGC CGTCGCCCAG GCCGGCGGAT GAGAGCCAGG TGAGTGGAGC 
    TCCACGAACC CACCCCACCC TTCCCGCTGC GGGTTCCTGA CCTGGCCTGT 
    GTGCCTGTGC CGCGAGAGAG CGCGAGATGT GGATCGGCTA GTCTCTCCAT 
    GGTCTCGTGC TCCTCGTCCC ATGGTGTTTT GCTTACTTGC CCGTGTGTGT 
    GCTGATGCTG CTGAAATGCT CATCTGGAAA TCGGAATGGT GCGAGTGGGA 
    AATGTGGGAG GATGAGGAGG AAGGAGGGAA GTAGCGCGAC TCATGCCCAT 
    CCTAGAATTG ACCTTCAGGT AGAGATAGAT AGGAATTGCG CACGACCCTA 
    TTACAGGATG AAAAATTCCA AATCCAGAGT TAATCACTTC AACTAACAAG 
    AGTATTATGC AATGTTTTTT TCCTTTGTCG GCCGTTCACA CTCATGATCT 
    ACCAACGATG GTTTAGATTC TAACCTTAGC AGCTGAAATC AACCGAGGAA 
    TAGGCTTATG CGCGCATCAA TTGGCACCCC TATATATTTT TCTTTCATTC 
    ATGAACAAAC GTCCAATGGT AGTATGATAC ATCGATGAAC AACTGAACAC 
    ATGCTACTAG TTATCTTTCT TGGCAACTGC AGACGTGCAA ATGGCAAGTA 
    GAGGACTGCT CTGCAAGCAC ATGTTATGAT TTTCTACTCC TGTTTTCATT 
    AGTCCTTCTT ATAATACATT AGTGTAGCGG AGCGTATTAT GCAGTTTTGC 
    TGTTTCAGAA TTATGGAACA CCCTTTTGCC CATGGAAACA ATGCGACACA 
    TGGTTTTATA CTAATGTATA TGTCTCTCTT TGTTACCTTT TAGCATGTTG 
    GATCATGCTG ATGCTAATCT CTGCTATTTG CAGTGAACCA TGGGAGGATT 
    TTGCTGTTGC CTCTGCACTG ACGATTTCGA GGAGTACGCT CATCCAAATA 
    ACCCTATCTA TAGGCAAGGT GTATGCCTAA GGAATTTTTT CCACAACTTT 
    TTTGGCGGGT ATACTGCCAC ATTCCAGAGG CTCGAATCTA GACCTAGCAA 
    CCCAGCTCAA GGGGCTGCTC CATTGGCATC CACTAATCCA AGTACCAATA 
    TAACTGACAA TTCATTATCC GAAACTTATC ACCTTGTGTC CAGACCTCCA 
    CCGTATGATA CTGATCCTAG ATATGCCCGT GTTCAAAGAG AGGGTTTGGT 
    ATCTAGGCGT GAAAAGTCTA TAAATCTAAC ACAAGAAGAG TCACTGGCTC 
    TTAGGCGAAA TGGCAGCAGC TCTGGCATTG AACATTTAGC TGCTCAGAAG 
    AAATGGAGCA GCACTGAACC TGAGGGTGAA TATAAAGTCC ATCACTCTGA 
    ATCCACCAAG AGTTTATCCG CAAAATCGTA TAACAGCAGT TTTGCAGTTG 
    TCACTTCAGA AGATGAAGAT GTCTGCCCTA CTTGTCTAGA AGAATACACT 
    CCAGACAATC CGAAGATTAT AGCTAAATGC TCCCATCATT ATCATCTTAG 
    TTGTATCTAC GAATGGATGG AAAGAAGTGA TACTTGTCCG ATTTGTGGGA 
    AGGAAATGGA GTTTTGTGAA ACCCCATGAG AGATTTCTCG CTGGTTGTAT 
    CAGTGGAAGG CAAAAGATCT ACAGTGTGAT ATGCTGGAGA GTCTGTAAAT 
    AATACTAGTT GTCCAGATAG ATCTCTTTTT TGAGATCAAA TTCTTATGTG 
    TACTGAAATC ATGGCCTACA AAAAAGAAAA TGCGCTAGAA TTTG

    Gene models with high sequence identity

    1. AT5G15790.2 [+] show detail - RING/U-box superfamily protein
      E-value: 4e-49; Score: 193.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 1.6e-15
    Gene3D no description 3.6e-11
    HMMPanther ZN/RING FINGER PROTEIN 2 1.2e-08
    HMMPanther RING FINGER CONTAINING PROTEIN 1.2e-08
    HMMPfam Zinc finger, C3HC4 RING-type 2.8e-07
    ProfileScan Zinc finger, RING-type 11.678
    HMMSmart Zinc finger, RING-type 3.6e-05

    See the detailed result >

    AT5G15790.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02290.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR