K34732

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34732

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34732

Determination of introduced cDNA(s)

  • J023126C06 - Rice Full-length cDNAs - Original: J023126C06

    full reading [+] show sequence

    Nucleotide sequence: J023126C06 - full reading 
    GGGAGCCGCC GGCGAACGGC GCCGACACTT TCCACCACTC TGTCGTCGTT 
    GCTTCTCCTA CTGGCGACGA CGACGACCAA ATTGTGCCGG AGCTGCAGCG 
    ACGGCGAGCG TCACGCCCTC CTACGCCGCA TCCAGCCGCT CATCGGCCCT 
    GAGTTCTCCT CCAGCGGACG GTTGGATTGG GACGAGGCCG TGGACTGCTG 
    CCGCTGGGAG GGCGTCACAT GCAGCGTCGC CGGCCGACGA CGAGAAGCAG 
    CAGCTGGTGG CCGCCGTGTC GTGTCGCTGT CGCTCCCTGG AGTCGGCATC 
    GCCGGCGCCG TGGATGCCGC CGTGCTTGCG CCGTTCACGG CGCTTGAGAA 
    GCTCGACCTG TCCGGCAATC AAATCACTAG CTTTTCAGCT GCTAATCGCT 
    CAGACATGGT TGTCGGTGCT GTTCTCAACA ACTTAACCGC ACTTACGGAG 
    CTGCACCTAG CCGGGAATGA GATCACCACC ACAGGCTGGA TTTCCAATTT 
    GACGTCCCTG CAGGTTATTG ACATGTCCAG CAATAAAGTA CATGAGCTCA 
    ACGGTATTTG TGGCCTCCAT CAACTAAAAT ATCTAAGCCT TGGTTTTAAC 
    ATGATACAAG GAGTAATTAA TCCATGCTTG GGGAAATTGC AGTACCTGGT 
    ATACTTGGAC ATGGGATCAA ATTTTCTCAC AGGTGAGATT GGACAATATT 
    TACTAAGCAA CTTAACCCAA GTAGAAGAAG TACATCTTGG GGACAACAAT 
    CTTACTGGCA CATTTGACTT CTCGTCTTTG GCTAACAACT CTGAGCTCCA 
    CAGCATCGTC CTCTCGAACA ACTGCAAACT AGAAATCGAA ACGGAGCTTG 
    TAAGGTGGAC ACCGTTGTTC CAGCTCGAAT ACTTGAATCT AAGCAATAGT 
    ATTGTCAACA AGAGAAGCAA CGGGATCATC CCAACTTTTC TGTCAGCCCA 
    AGTGAGCCTC TCTGGGATTG ATCTCTCCAT ATGTTCACTC CAGGGGAGGA 
    TCCCATCTTG GATGTTGTTG TATAACGTTT CTTTAGGTTT CCTCTTGCTG 
    CGCGGTAATA GCATGGATTT CCTCGACACT GGCAATCTCG GAGCCAACGT 
    TACGTCATCA ATGGAGGTGC TTGATCTGTC TGACAACAGG ATATCAATGA 
    AAATGCCATA CAACTTTGGA AGTCTATTTC CATATCTAAA GTACCTTGAC 
    ATGTCTTCCA ACATGCTGAA TGGCGGAGTT CCATCACTAG CAGAAGCCGC 
    GTCATCGTTG CAGTTTCTTG ACTTGTCATT TAACATGCTC AATGGGGAGA 
    TATCGCCGGA ATTAATAGGG AATGCATGCA TTTTGACATC CCTTCTGCTC 
    TCACACAATG ACCTAACTGG GCCTATGCCA CCCTTCCATT GGAGCCTAGG 
    GCAGTTGACT CACCTGAGCG TTGAAAACAA CCAACTATCT GGTCGTTTGC 
    CGCCTCTACT TACGAACTGC ACCAACCTTG AGAATCTCAA TGTGAGGAAT 
    AACCGTTTAT CTGGTGTAAT CCCAGTAGGC CTCCTCAGCT TTGAGAAGCT 
    TGGTGCTCTC CTCCTTGGAG GAAACCAGTT TCATGGTGTC ATTCCTTGGG 
    ATATTTGCCT CAACAACCAT ATCCACTTCA TAGATCTTTC CAATAATTGG 
    TTCTCTGGTG AGATACAGGT TGCTTATACA GTGTTTTCTG GTCAGAGCTG 
    CCAATGAACT CTGAGGATGA CCCATTTGGC AACATCACAC AGAGAAGACA 
    GACATATGTC GAATTCACGA CGAAAGGGGA GAGCTTGACA TACATGGGAA 
    TGCCTTTAGA GCTCATGATA GGCATAGATT TGTCGATGAC TCGGCTATCT 
    GGACCCATCC CTAGCTCTGT TGGGTTCTTG CTGCAGCTCA AATCGCTCAA 
    CCTATCACAC AACAAGCTTG TTGGTTCGAT ACCTGACACG TTCATGTACC 
    TGCATGAAAT GGAGAGCATG GATCTCTCAC ACAACCATCT CAATGGGAGT 
    GTCCCAGTGG AGCTAGCCAA CCTCTCCTTC CTGAGCTTCT TCAGTGTTGC 
    ATACAACAAT CTCTCCGGTG AGATTCCCTT TGAATCACAG TTTTGTACGT 
    TGAACGGAAC GGCATTCGAA GGGAATGAGA ACCTCTGTGG AGAAATTGTT 
    GACAAGATTT GTCCAATGAA CTCGAACTGC TCACATGATA GCGATGATGA 
    GATGCATCAG TTGTTGTCAA CGGATACCAT GGACACGCCG CTGATCTACT 
    GGTCCTTCGT TGCTGGGTCC TTCGCCATTG GCTTTTGGGG CATCATTGCA 
    TTACTTATAT GGAATACAGC CTTCAGGAGC AGGCTCTGCA GCTTCATGGA 
    TGGATGCATG TCTAAGATGG GCTGGTTTCT TGTGCCTTGA TTTAAAGCCA 
    CTTGTGCCCT CAACTACAAT ATCAATCAAT TTTTGCTCTG TTTCTATTCC 
    AATACAGTAT TCCGCATTAA ACAGATTTTT GTAAGAGGAG TTGAATTTAC 
    AGAATTCCTT TTGATGGAAA AGCTAGTAAC TCCTTATTCA CTCAACATTG 
    GAAACTGGTT GTTTTGAAGT CC

    Gene models with high sequence identity

    1. AT1G07390.3 [+] show detail - receptor like protein 1
      E-value: 8e-58; Score: 112.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Leucine-rich repeat 0.12
    HMMPfam Leucine-rich repeat 0.15
    HMMPfam Leucine-rich repeat 0.45
    HMMPfam Leucine-rich repeat 0.17
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 1.5e-05
    HMMPfam Leucine-rich repeat 0.011
    HMMPfam Leucine-rich repeat 0.78
    superfamily L domain-like 1.3e-55
    superfamily L domain-like 2.2e-33
    superfamily L domain-like 1.3e-20
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.9e-37
    HMMPanther LRR RECEPTOR-LIKE KINASE 7.8e-49
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 7.8e-49
    Gene3D no description 1.8e-39
    Gene3D no description 2.6e-33
    Gene3D no description 1.2e-24
    FPrintScan Toll-like receptor, leucine rich repeat-containing 4.7e-05
    FPrintScan Toll-like receptor, leucine rich repeat-containing 4.7e-05
    HMMSmart no description 43
    HMMSmart Leucine-rich repeat, typical subtype 15
    HMMSmart no description 530
    HMMSmart Leucine-rich repeat, typical subtype 220
    HMMSmart no description 60
    HMMSmart Leucine-rich repeat, typical subtype 29
    HMMSmart no description 77
    HMMSmart no description 480
    HMMSmart no description 100
    HMMSmart Leucine-rich repeat, typical subtype 34

    See the detailed result >

    AT1G07390.3

    Model type
    Protein coding
    Short Description
    receptor like protein 1
    Computational Description
    receptor like protein 1 (RLP1); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 15 (TAIR:AT1G74190.1); Has 131801 Blast hits to 32287 proteins in 1280 species: Archae - 68; Bacteria - 10618; Metazoa - 36270; Fungi - 1824; Plants - 73532; Viruses - 22; Other Eukaryotes - 9467 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR