K34732

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34732

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34732

Determination of introduced cDNA(s)

  • J023126C06 - Rice Full-length cDNAs - Original: J023126C06

    full reading [+] show sequence

    Nucleotide sequence: J023126C06 - full reading
    GGGAGCCGCC GGCGAACGGC GCCGACACTT TCCACCACTC TGTCGTCGTT 
    GCTTCTCCTA CTGGCGACGA CGACGACCAA ATTGTGCCGG AGCTGCAGCG
    ACGGCGAGCG TCACGCCCTC CTACGCCGCA TCCAGCCGCT CATCGGCCCT
    GAGTTCTCCT CCAGCGGACG GTTGGATTGG GACGAGGCCG TGGACTGCTG
    CCGCTGGGAG GGCGTCACAT GCAGCGTCGC CGGCCGACGA CGAGAAGCAG
    CAGCTGGTGG CCGCCGTGTC GTGTCGCTGT CGCTCCCTGG AGTCGGCATC
    GCCGGCGCCG TGGATGCCGC CGTGCTTGCG CCGTTCACGG CGCTTGAGAA
    GCTCGACCTG TCCGGCAATC AAATCACTAG CTTTTCAGCT GCTAATCGCT
    CAGACATGGT TGTCGGTGCT GTTCTCAACA ACTTAACCGC ACTTACGGAG
    CTGCACCTAG CCGGGAATGA GATCACCACC ACAGGCTGGA TTTCCAATTT
    GACGTCCCTG CAGGTTATTG ACATGTCCAG CAATAAAGTA CATGAGCTCA
    ACGGTATTTG TGGCCTCCAT CAACTAAAAT ATCTAAGCCT TGGTTTTAAC
    ATGATACAAG GAGTAATTAA TCCATGCTTG GGGAAATTGC AGTACCTGGT
    ATACTTGGAC ATGGGATCAA ATTTTCTCAC AGGTGAGATT GGACAATATT
    TACTAAGCAA CTTAACCCAA GTAGAAGAAG TACATCTTGG GGACAACAAT
    CTTACTGGCA CATTTGACTT CTCGTCTTTG GCTAACAACT CTGAGCTCCA
    CAGCATCGTC CTCTCGAACA ACTGCAAACT AGAAATCGAA ACGGAGCTTG
    TAAGGTGGAC ACCGTTGTTC CAGCTCGAAT ACTTGAATCT AAGCAATAGT
    ATTGTCAACA AGAGAAGCAA CGGGATCATC CCAACTTTTC TGTCAGCCCA
    AGTGAGCCTC TCTGGGATTG ATCTCTCCAT ATGTTCACTC CAGGGGAGGA
    TCCCATCTTG GATGTTGTTG TATAACGTTT CTTTAGGTTT CCTCTTGCTG
    CGCGGTAATA GCATGGATTT CCTCGACACT GGCAATCTCG GAGCCAACGT
    TACGTCATCA ATGGAGGTGC TTGATCTGTC TGACAACAGG ATATCAATGA
    AAATGCCATA CAACTTTGGA AGTCTATTTC CATATCTAAA GTACCTTGAC
    ATGTCTTCCA ACATGCTGAA TGGCGGAGTT CCATCACTAG CAGAAGCCGC
    GTCATCGTTG CAGTTTCTTG ACTTGTCATT TAACATGCTC AATGGGGAGA
    TATCGCCGGA ATTAATAGGG AATGCATGCA TTTTGACATC CCTTCTGCTC
    TCACACAATG ACCTAACTGG GCCTATGCCA CCCTTCCATT GGAGCCTAGG
    GCAGTTGACT CACCTGAGCG TTGAAAACAA CCAACTATCT GGTCGTTTGC
    CGCCTCTACT TACGAACTGC ACCAACCTTG AGAATCTCAA TGTGAGGAAT
    AACCGTTTAT CTGGTGTAAT CCCAGTAGGC CTCCTCAGCT TTGAGAAGCT
    TGGTGCTCTC CTCCTTGGAG GAAACCAGTT TCATGGTGTC ATTCCTTGGG
    ATATTTGCCT CAACAACCAT ATCCACTTCA TAGATCTTTC CAATAATTGG
    TTCTCTGGTG AGATACAGGT TGCTTATACA GTGTTTTCTG GTCAGAGCTG
    CCAATGAACT CTGAGGATGA CCCATTTGGC AACATCACAC AGAGAAGACA
    GACATATGTC GAATTCACGA CGAAAGGGGA GAGCTTGACA TACATGGGAA
    TGCCTTTAGA GCTCATGATA GGCATAGATT TGTCGATGAC TCGGCTATCT
    GGACCCATCC CTAGCTCTGT TGGGTTCTTG CTGCAGCTCA AATCGCTCAA
    CCTATCACAC AACAAGCTTG TTGGTTCGAT ACCTGACACG TTCATGTACC
    TGCATGAAAT GGAGAGCATG GATCTCTCAC ACAACCATCT CAATGGGAGT
    GTCCCAGTGG AGCTAGCCAA CCTCTCCTTC CTGAGCTTCT TCAGTGTTGC
    ATACAACAAT CTCTCCGGTG AGATTCCCTT TGAATCACAG TTTTGTACGT
    TGAACGGAAC GGCATTCGAA GGGAATGAGA ACCTCTGTGG AGAAATTGTT
    GACAAGATTT GTCCAATGAA CTCGAACTGC TCACATGATA GCGATGATGA
    GATGCATCAG TTGTTGTCAA CGGATACCAT GGACACGCCG CTGATCTACT
    GGTCCTTCGT TGCTGGGTCC TTCGCCATTG GCTTTTGGGG CATCATTGCA
    TTACTTATAT GGAATACAGC CTTCAGGAGC AGGCTCTGCA GCTTCATGGA
    TGGATGCATG TCTAAGATGG GCTGGTTTCT TGTGCCTTGA TTTAAAGCCA
    CTTGTGCCCT CAACTACAAT ATCAATCAAT TTTTGCTCTG TTTCTATTCC
    AATACAGTAT TCCGCATTAA ACAGATTTTT GTAAGAGGAG TTGAATTTAC
    AGAATTCCTT TTGATGGAAA AGCTAGTAAC TCCTTATTCA CTCAACATTG
    GAAACTGGTT GTTTTGAAGT CC

    Gene models with high sequence identity

    1. AT1G07390.3 [+] show detail - receptor like protein 1
      E-value: 8e-58; Score: 112.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Leucine-rich repeat 0.12
    HMMPfam Leucine-rich repeat 0.15
    HMMPfam Leucine-rich repeat 0.45
    HMMPfam Leucine-rich repeat 0.17
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 1.5e-05
    HMMPfam Leucine-rich repeat 0.011
    HMMPfam Leucine-rich repeat 0.78
    superfamily L domain-like 1.3e-55
    superfamily L domain-like 2.2e-33
    superfamily L domain-like 1.3e-20
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.9e-37
    HMMPanther LRR RECEPTOR-LIKE KINASE 7.8e-49
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 7.8e-49
    Gene3D no description 1.8e-39
    Gene3D no description 2.6e-33
    Gene3D no description 1.2e-24
    FPrintScan Toll-like receptor, leucine rich repeat-containing 4.7e-05
    FPrintScan Toll-like receptor, leucine rich repeat-containing 4.7e-05
    HMMSmart no description 43
    HMMSmart Leucine-rich repeat, typical subtype 15
    HMMSmart no description 530
    HMMSmart Leucine-rich repeat, typical subtype 220
    HMMSmart no description 60
    HMMSmart Leucine-rich repeat, typical subtype 29
    HMMSmart no description 77
    HMMSmart no description 480
    HMMSmart no description 100
    HMMSmart Leucine-rich repeat, typical subtype 34

    See the detailed result >

    AT1G07390.3

    Model type
    Protein coding
    Short Description
    receptor like protein 1
    Computational Description
    receptor like protein 1 (RLP1); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 15 (TAIR:AT1G74190.1); Has 131801 Blast hits to 32287 proteins in 1280 species: Archae - 68; Bacteria - 10618; Metazoa - 36270; Fungi - 1824; Plants - 73532; Viruses - 22; Other Eukaryotes - 9467 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR