K34736

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34736

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34736

Determination of introduced cDNA(s)

  • J023010G17 - Rice Full-length cDNAs - Original: J023010G17

    full reading [+] show sequence

    Nucleotide sequence: J023010G17 - full reading 
    GAGACGCCAC ACACACCCAA ACCCAACCTC CCAAAACACC CACCCGGTTT 
    ACCAGAGATC CGCGCCCGCC ACTTGTAAAC CTGCTGCACC CATGGCGCCC 
    AGAGCAGCTA CGGTGGAGAA GGTTGCTGTG GCGCCACCCA CCGGGCTTGG 
    TCTTGGCGTC GGCGGAGGTG TCGGAGCCGG GGGTCCTCAC TACAGGGGCG 
    TCCGCAAGCG CCCGTGGGGG CGTTACGCAG CGGAGATCCG TGACCCTGCC 
    AAGAAGAGCC GGGTGTGGCT CGGTACCTAC GACACGGCAG AGGAGGCCGC 
    CCGCGCCTAC GACGCCGCCG CTCGAGAGTT CCGGGGTGCC AAGGCAAAAA 
    CAAGCTTTCC GTTTGCATCA CAGTCGATGG TCGGCTGTGG CGGCAGCCCC 
    AGCAGCAATA GCACGGTAGA CACCGGTGGC GGCGGGGTTC AGACGCCTAT 
    GCGGGCCATG CCTCTGCCGC CGACTCTGGA CTTGGATTTG TTCCACCGCG 
    CGGCTGCTGT GACTGCAGTC GCCGGCACCG GCGTTCGCTT TCCTTTCAGA 
    GGATATCCCG TTGCACGTCC AGCAACGCAT CCTTACTTTT TCTATGAGCA 
    GGCTGCAGCG GCTGCCGCAG CTGAGGCTGG ATACCGTATG ATGAAGCTTG 
    CACCGCCGGT CACCGTGGCG GCGGTTGCAC AAAGTGACTC CGACTCCTCG 
    TCGGTGGTTG ATCTCGCGCC GTCACCTCCA GCGGTTACGG CGAACAAGGC 
    GGCAGCTTTC GATCTGGATC TGAACCGGCC GCCGCCGGTA GAGAACTAGC 
    TCAGGATGGG TTAGCTGACG ACTTTGTAGT TTCTCTCTTA TTTTCTTCTT 
    TGATGGATAT TTCTCTCCGA TGTTTTGGTC CTCTGTGTTT TTGTTTAGTA 
    GCCTGTGAGA GACGGAAGAG CCTTGTAAAT AGTTTTTCTG CCGAGGGCGA 
    AATTCATCTT GGGATCTGTT AATTAGAACA GATCATGCCG GCGATGAGAT 
    GGACTAAACC GTGGAGTGTA TGTATTCCTT TATATTAGTA TGAAGAAATT 
    ATTCAGAAAG TC

    Gene models with high sequence identity

    1. AT3G15210.1 [+] show detail - ethylene responsive element binding factor 4
      E-value: 7e-17; Score: 85.10

     

    InterPro Scan Digest

    Program Description E-value
    superfamily DNA-binding, integrase-type 4.6e-23
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 23.841
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.1e-22
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 5.9e-18
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.9e-11
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.9e-11
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.5e-35

    See the detailed result >

    AT3G15210.1

    Model type
    Protein coding
    Short Description
    ethylene responsive element binding factor 4
    Curator Summary
    Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.
    Computational Description
    ethylene responsive element binding factor 4 (ERF4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response factor 8 (TAIR:AT1G53170.1); Has 6170 Blast hits to 5786 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6156; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR