K34809

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34809

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34809

Determination of introduced cDNA(s)

  • J013122N19 - Rice Full-length cDNAs - Original: J013122N19

    full reading [+] show sequence

    Nucleotide sequence: J013122N19 - full reading 
    GAGTAGTCGA AGAATCCCAA ACCCTCTCCT CCTTCCATGG CGATTTGACC 
    CCCAAACCCT AGCAATGCCC TAGACTAGGA CTAGTAGGTA GCGGAAGGAA 
    GCTGGAATCG GAAGGAAGGA AGGAAGGTGG GAGGGATGGG TTCGAAATCG 
    AACACGGAGA GGGCGAGGAA GGCGCTGGAG GCCATGAAGC AGCTGGGTTT 
    CTCCAAGAAG GAGGCCACCC CTGTCCTCAA GAACCTCCTC AGGCTCTTCG 
    GCAACAACTG GGAGCCCATC GAGGACGAGT GCTACCGCGC CCTCGCCGAC 
    GCCATCCTCG ACCGCCACCA GGAGACCGCA GCTGACCGCG GCTGCAGCGC 
    GACAAGGCCA ACGCCGGACG ATGATCATCA CCCCCTTACC CTCTGTGGTG 
    CTTCGCGCGA CGTGGATACT GAGACCGACG AACCTCGCAC CAAGAAGCCT 
    AGGGCCACCA ACTCAGATCC TCAATCGCCT CCATCCCTTA CGGACGACCA 
    AGATGTTCCT GCAGCTATCT CACCCCCATC CCATGGTGCT TCTCCTCAAT 
    TCCGTCCACA GACCAGGGCC TCTGCACGAC TGCGCCAAGC TTCTCCTTCT 
    TCTGTTACAG CAGCACACAA GAGGCCAAGA CAGATGATGG ATGAAGATTT 
    CCAAGACTCT GCATTCCTCA GGGAACCCAA GCCTGAGCCC GATATCGATA 
    TGGACGCCAT ACAAGGCACT GCTGCTACAT CAGACTGCCC AAATGCCCAC 
    CTTGGCCTCA TTGACTATCC GCTCAATGCC AGCTCCTCAA GGGTTGCACT 
    TCCTCTGGCA TTGCTTCCAC CTGATCAAAA TGTTCCACAG ATTTCAGGTC 
    CTAAAAAAAG GGCAATTCAA CCTTGTAGCA AGGTGAACAC GGGGGAAGGA 
    TCTTCAGTCA TTGATGTAGC ATCATCCACT ATGGGTGAGG TCAAAATGTC 
    ACTGAAATGC AGTGTTGACC CAAAGTTCCG CATGCCTTCC TTAGAAGCAG 
    TTTTCAAGAT GGTGGAGGAT AAATATCTTC ACTCATACAA GATTCTGCCT 
    CCTGAGTTTT CCATTGGTAG CCTCATGAAT GAGATATGCC AATGTGTTGT 
    ACAACTGGGT AGTGATCATA TTGCAGAACA TAATACAGAA TCAGATGTTG 
    CTGGCAATGG GAGATGCTCA CAAAATGAGC CAATGACAGG TAGCATTCCA 
    TTTGTGAAGC CAATAGCATG CGAGGATGGT GGAAATAGGA AATGTAAATC 
    TGCAGGAGAA TCATTTATTG TGGAAGACTC AGAAAATTCA AGTGTTGCTA 
    AACAGCAGAC TCATTTGGCA CTTGCCAACT TGAAGCCTAT CCATGATGTA 
    ACTGATATAT CCAAGGGAGA AGAGAGAGTG AGGATATCGG TGGCCAATGA 
    ATTTGCAAGT GAGAAATGTC CTCCTTCCTT TTATTATATA CGAGGAAACC 
    TTGTTTTCC

    Gene models with high sequence identity

    1. AT5G43990.5 [+] show detail - SET-domain containing protein lysine methyltransferase family protein
      E-value: 1e-27; Score: 121.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam WIYLD domain 7.5e-18
    HMMPanther SET DOMAIN PROTEIN 0.0000000015
    HMMPanther SET DOMAIN PROTEINS 0.0000000015

    See the detailed result >

    AT5G43990.5

    Model type
    Protein coding
    Short Description
    SET-domain containing protein lysine methyltransferase family protein
    Curator Summary
    Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.
    Computational Description
    SUVR2; FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: homolog of SU(var)3-9 1 (TAIR:AT1G04050.1).
    Link
    InterPro Scan - TAIR