K34811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased width (PATO:0000599) (Cauline leaf::Shape::narrow)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) desaturated green (PATO:0001272) (Stem::Color::pale)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34811

Determination of introduced cDNA(s)

J023029D02 - Rice Full-length cDNAs - Original: J023029D02

full reading [+] show sequence

GAACCGTCAA GAGAGAAGTA TTCGGAAAGA AGAGAAGGAA AAAAAGAATT 
TTTAGAGAGA GGAGGAAAAA AATATCCCCA ATCCCATCAT CCCTTCACCC 
ACCCGCACGC GTCTCCTCCG ACTCCGATCC GAGCTCCAGA TCTGCGGCGC 
CGGCGACCAA CCTCTCCGGC GGCGGGGGCG GCGGCGGAGA TCCACGATGC 
CTTCGTCGGA GCAGGGGGCC TCGCCCCTGC GCCGCCTCCT CCGCGTCGAC 
GCCCTCGTCC TCCCCTCCGC TTGCTCCCAC CGCCTTAAGC CTTGGTCTCT 
CCATCCCCAC CTCCTCTCAT CCTCCTAACG CCATCCAATC TCTCTTCTCC 
CCGTCTCTTT CTCCTGCTCC CCGTTGCCCT CCCATTTCTT CCCCTTTTCT 
TCTCGTAGCT ATAGGGTGAT ACACTTCTCT GATTATTGTT GTTGTTCTTC 
CCGTGCTGAT TTGGATTTAA TTACAAGTAT TTGTGTTGGA TCGGTTGGAC 
GCGCTCACTC GGTTTGGTTT GGTTTGGATT GTATTGGGTT GGATCGGATC 
GGATTAGCCG CGCTATAGCG TCAGGGGATC AGCTCGGCTC ACTGTGGTTT 
TTGAGGTGTT AGGGTTTGAG TGCTAGGTTG TTTGCTTGAT GGATGGTCAT 
TCCTGTGGTG ATCTCGGGAG AGTGTCGGAA GTGATATCCG ACGGCACCTC 
ATCGGGTAGC GCAGACGGCG GCAAGAGCCT GCCTGAGAAG CATTCTGCGC 
TGGCTGATGC TACTTCTGGA GTGGCGGCGG AGAATGCCGA TAATTTGTCA 
CAAGCTGGGA AGTACATGGA TTTCTCCAGT ACCACCAGCT TGGGGGTGAA 
GAAAGGCTTC CAGAAGTGCA TGACGTTTCC GCCCTCTAGC GGCGAGGCAC 
AACAGCAGCA GGGTTCATGC TGTGATGCAG ATAAGAATCC CAAGGATGTG 
CCAACCTATG AGCGCTCCGT GTCACTGCCC CCAACTTTGA AGATCATATC 
TGCTATGAAA GGAAGCCGCC AAAAGAATGG GATGGCTTCA TCAACTGAAA 
GTCGCCACGT CAAATGGGCC CCTGACGTGT ATGACCCCCC AGTGACATCT 
GTATGTCATT CAGTGAATAA CAGCTACCAG CGTCGGTCCA AATCCCGGAA 
GAAGGACAAG AATAAGCAGA AGCAGAAACA AAAGCAAAAG GGTAGGTCCA 
AGAAAAACCA CCAGAATGCT ATCCAGAGTT CAGCAGTGCT CCAAGCTCCT 
GGCGAATTTG ATAGGCTCAA GGATGCTGAA ACCACAAGTA GTAATTCAGC 
ACCAGACGAT CTCAACAAAC ATGAGACCGA TATATTGGAT TATGGCATCA 
GCAGTCAAGA CGCCAAATGT GGAAGCAGCT TTTTGCGTGA ATCGGCTGCT 
AAAATGCATT TCTCCACTGC TGAGGCTTCC TGAAAGAAAG GAAAATGAGT 
CCTGCGGATT CTCCCTTGGT ATGTAAATAT GATGGATGTG TAGATAAATA 
AAATCCAGTT TGTTGTTGTG TTTCC

Gene models with high sequence identity

Not founds.

InterPro Scan Digest

See the detailed result >

J023023G21 - Rice Full-length cDNAs - Original: J023023G21

full reading [+] show sequence

GAACCGTCAA GAGAGAAGTA TTCGGAAAGA AGAGAAGGAA AAAAAGAATT 
TTTAGAGAGA GGAGGAAAAA AAATATCCCC AATCCCATCA TCCCTTCACC 
CACCCGCACG CGTCTCCTCC GACTCCGATC CGAGCTCCAG ATCTGCGGCG 
CCGGCGACCA ACCTCTCCGG CGGCGGGGGC GGCGGCGGAG ATCCACGATG 
CCTTCGTCGG AGCAGGGGGC CTCGCCCCTG CGCCGCCTCC TCCGCGTCGA 
CGCCCTCGTC CTCCCCTCCG CTTGCTCCCA CCGCCTTAAG CCTTGGTCTC 
TCCATCCCCA CCTCCTCTCA TCCTCCTAAC GCCATCCAAT CTCTCTTCTC 
CCCGTCTCTT TCTCCTGCTC CCCGTTGCCC TCCCATTTCT TCCCCTTTTC 
TTCTCGTAGC TATAGGGTGA TACACTTCTC TGATTATTGT TGTTGTTCTT 
CCCGTGCTGA TTTGGATTTA ATTACAAGTA TTTGTGTTGG ATCGGTTGGA 
CGCGCTCACT CGGTTTGGTT TGGTTTGGAT TGTATTGGGT TGGATCGGAT 
CGGATTAGCC GCGCTATAGC GTCAGGGGAT CAGCTCGGCT CACTGTGGTT 
TTTGAGGTGT TAGGGTTTGA GTGCTAGGTT GTTTGCTTGA TGGATGGTCA 
TTCCTGTGGT GATCTCGGGA GAGTGTCGGA AGTGATATCC GACGGCACCT 
CATCGGGTAG CGCAGACGGC GGCAAGAGCC TGCCTGAGAA GCATTCTGCG 
CTGGCTGATG CTACTTCTGG AGTGGCGGCG GAGAATGCCG ATAATTTGTC 
ACAAGCTGGG AAGTACATGG ATTTCTCCAG TACCACCAGC TTGGGGGTGA 
AGAAAGGCTT CCAGAAGTGC ATGACGTTTC CGCCCTCTAG CGGCGAGGCA 
CAACAGCAGC AGGGTTCATG CTGTGATGCA GATAAGAATC CCAAGGATGT 
GCCAACCTAT GAGCGCTCCG TGTCACTGCC CCCAACTTTG AAGATCATAT 
CTGCTATGAA AGGAAGCCGC CAAAAGAATG GGATGGCTTC ATCAACTGAA 
AGTCGCCACG TCAAATGGGC CCCTGACGTG TATGACCCCC CAGTGACATC 
TGTATGTCAT TCAGTGAATA ACAGCTACCA GCGTCGGTCC AAATCCCGGA 
AGAAGGACAA GAATAAGCAG AAGCAGAAAC AAAAGCAAAA GGGTAGGTCC 
AAGAAAAACC ACCAGAATGC TATCCAGAGT TCAGCAGTGC TCCAAGCTCC 
TGGGCTCAAG GATGCTGAAA CCACAAGTAG TAATTCAGCA CCAGACGATC 
TCAACAAACA TGAGACCGAT ATATTGGATT ATGGCATCAG CAGTCAAGAC 
GCCAAATGTG GAAGCAGCTT TTTGCGTGAA TCGGCTGCTA AAATGCATTT 
CTCCACTGCT GAGGCTTCCT GAAAGAAAGG AAAATGAGTC CTGCGGATTC 
TCCCTTGGTA TGTAAATATG ATGGATGTGT AGATAAATAA AATCCAGTTT 
GTTGTTGTGT TTCCTGCTGT GTGAGGCGTT AAGAGAACTT CTGGCGTGCT 
TTGATTTGGA GCAGTTACCA TGACTGTTGG ACTGGTTTTT GTATGTATTG 
ATGGACAAAG CTAGTAAGCA TTAATCTATG AGCTGCAGTT GTTTTCCTTG 
ATCAATGATT ATATATCAGC TGCTGTTGTA TTGGTT

Gene models with high sequence identity

Not founds.

InterPro Scan Digest

See the detailed result >

J013033A11 - Rice Full-length cDNAs - Original: J013033A11

full reading [+] show sequence

GACGGAGCTC GAGCAACAAC CACCCACGCA CATCAAGGAG TCATCTCACC 
ACTCAACGAC AGCCTCGCAC AAGAGCAGGG AGGAATTTTC GGTTGTTCCT 
CGTCCCAAGG ATCAATAGAT GGAGAAGGCA GCGTGCAACG AGCATGTGAT 
CGGGATCCCA GTGAGCAACA GGGCTTTCGG CATCGAGGAG CCGGATTTCC 
CAAGCGAAGG AGCAGCCGCC TACCACGCCG AGGCGAAAAG CTCTGCAACC 
GCGCGTACGA GCTCCAGATT TGGCAGGACA GGGGACAGGC TCGCTCAAGG 
CATCAAAGAA CATGTGACTC TAGGACCAAA ACTGTACGAG ACCATGAAAG 
GCAAGCTGAC GCTGGGCGCG AGAATCCTCC AGGCAGGCGG CGTGGAGAAG 
GTCTTCCGCC GGTGGTTCGC CGTCGGCAAG GGCGAGAAGC TCCTGAGGGC 
CTCCCAGTGC TACCTGTCCA CCACGGCCGG CCCGATCGCC GGCATGCTCT 
TCATATCGAC GGAGAGGATC GCGTTCCGGA GCGACCGGTC GCTGGCGCTG 
ACCACCCCGA GCGGCGACAC GGTGCGTGTG CCGTACAAGG TGGCCATCCC 
TCTGAGGAGG GTGAAGACGG CCAAGCCGAG CGAGAACAAG CACCGGCCGG 
AGCAGAAGTA CGTCCAGGTG GTGACCGACG ACGGCTTCGA GTTCTGGTTC 
ATGGGATTCG TCAGCTTCCA GGTGACCCTG AAGAACCTGG AGCTGGCCGT 
CGCGCAGGCG CAGTGATCGA TCGATCTCTG ATGAAACAAA CGTCGAAGTT 
GGGTCGTCGG TTTCTTGGTC GTGTGCCTTG TGTGTGGTCT GGTTAATCTG 
TTGTGCATAT GTGGTAGCGT CGTAGGTGTT TGTGGTGGAT TGCTTGGCGT 
TTTTGGCTTT GGAGCAAGTC CGGTACACAT GGTAGGAGAA ATTTTAGTGC 
ATCAAATTTC TTGATTGGTG TTGGAGAAAA TAGTGCCACG GCAAAAGTGC 
CATCATATAC ATGTGGTATG TACAAGATCA ATGAGAAATC CAAAAATGTT 
TGTTCAACAC TACATACTAC AGC

Gene models with high sequence identity

AT5G08350.1 [+] show detail - GRAM domain-containing protein / ABA-responsive protein-related
E-value: 1e-45; Score: 181.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	GRAM	0.00000000023
HMMPfam	GRAM	0.000000000004

See the detailed result >

AT5G08350.1

Model type: Protein coding
Short Description: GRAM domain-containing protein / ABA-responsive protein-related
Computational Description: GRAM domain-containing protein / ABA-responsive protein-related; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain-containing protein / ABA-responsive protein-related (TAIR:AT5G23370.1); Has 358 Blast hits to 358 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR