K34845

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34845

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34845

Determination of introduced cDNA(s)

  • J033086A13 - Rice Full-length cDNAs - Original: J033086A13

    full reading [+] show sequence

    Nucleotide sequence: J033086A13 - full reading 
    GTGCGTCGCT ACTCCCAAAT CCGCGAAAAA TCGACAGAGA CCAGCCGCCC 
    AATCTGCCTG ATCCATCGGA GGAGGACGAC GAGGAGGAGG TTTGCGAGGC 
    AGCGGCAGGG AGAGGAAGAT GTCTTCGCTG CGGAACGCGA TCCAGCGGCG 
    CGCTCACAAG GAGCGCGCCC AGCCGGAGTC GAGGAAGAAG TTCGGGCTTC 
    TGGAGAAGCA CAAGGACTAC ATCGTTCGGG CGAAGGCTTT CCACCAGAAG 
    GAGGAAACCA TCAGGAAATT GAAGGAGAAG GCATCATTTA GAAACCCTGA 
    TGAGTTCTAT TTTAAGATGA TCAACAGCAA GACTGTTGAT GGAATTCATA 
    GGCCTAAGCC TGAAGCAAAC AAGTATACTG AAGATGAACT CATGCTGCTA 
    AAAACTAAAG ATATGGGATA CATCCTTCAG GGTATTCAGA GTGAAAAGAA 
    GAAAATTGAA AAATTAAGCT CCATGCTTCA TGAACTAGAC AACAAGCGAC 
    CAAACAAGCA TGTTTACTTT GCTGAAGACA GAGAAGAGGT CAAAGAAATA 
    CAATCTAGAA TAGAACAAAA GAGCAGTTCA CTTGGTTTGG ACAACATCCC 
    TTCGCGTATA AAGAGGAAAA CTGCTTCGTC CTATAGGGAG TTAGAGGAGA 
    GGAAACAGAG GGTTCAAAAG CTTGAGAAAC TGTATGCAGA CATGGCCTTG 
    CAGAAAGAGT TGAAGAAACC TGGACGGAAA AGAAAACTCC GTGAGGATGA 
    GATTGAGAAT CAAACATCCC GGCCTGTTTA TAAGTGGCGA GCACAACGGA 
    AGCGGTAAGA TGATGTGAAT GGCTTACAAT GGAATCATTG AGAATATATG 
    GAGTAACCAG TAGATCCTAA AGCAAACGGA GACTATTGTT TATTTTCTTG 
    AATTCTAATG CATTTACATG TAGCAGTGCC CCTCCACAAC CGTCTCTCTT 
    CATAGCCTTC ACTTGATTGT ATTTGTGGAT CCATGTTGGA TACCACTTTC 
    TGCTACCTGC TACTGATGTG ATGTACCTCT GCTTTTTACA AAATGTTGGG 
    TAACTACATC

    Gene models with high sequence identity

    1. AT3G60360.1 [+] show detail - embryo sac development arrest 14
      E-value: 4e-77; Score: 285.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPIR Small-subunit processome, Utp11 3.3e-83
    HMMPanther Small-subunit processome, Utp11 1.1e-75
    HMMPfam Small-subunit processome, Utp11 1.3e-61

    See the detailed result >

    AT3G60360.1

    Model type
    Protein coding
    Short Description
    embryo sac development arrest 14
    Computational Description
    EMBRYO SAC DEVELOPMENT ARREST 14 (EDA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: small-subunit processome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp11 (InterPro:IPR007144); Has 434 Blast hits to 428 proteins in 209 species: Archae - 4; Bacteria - 1; Metazoa - 127; Fungi - 141; Plants - 59; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR