K34907

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34907

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34907

Determination of introduced cDNA(s)

  • J013106O15 - Rice Full-length cDNAs - Original: J013106O15

    full reading [+] show sequence

    Nucleotide sequence: J013106O15 - full reading
    GGCCCGTGGC ACAACTCTTG TGTTGACCCG CCTCGCGCTC GCCTGCCACC 
    ACCGCCACCG CCAGCGAGCT GGATGAGCCA GCAGCCGCCC CCGCCCGCGG
    TTGCTTCCCC TCCCCACCAC GTCAAAACCC AACCCCAACC ATGATGCTCC
    TGCGCCACCA CCACCACCCC CACAGCGGCG CCGCCACCAC CAGCAGCAGC
    TGCAGCGGCG GCGGCGGCTG TTAGAGAGGA GGGCACACAC CACCACCGAC
    ACCGACACGC TCGCCATGCC ACCAAGCGAG GCGGCGGCGT GAGGCGACGC
    AGATCTGAAC GGAGGAGGAA TAGGAAGAAG GGAGGAGGAG GGGAGGGAGA
    GGAGTTGGAA GAGTTGGAGG AGGAGGAGAT CTCTTTCTTG TTCCCGCTCG
    ATGGAGCGGG GGGAGGGGAG GAGGGGAGAT TGCTCCGTGC AAGTGAGGAA
    GAAGAGAACG CGAAGGAAAA GCGATGGCCC TGATTCAATC GCTGAAACCA
    TCAAGTGGTG GAAGGAGCAA AACCAGAAGC TCCAGGAGGA GAATAGCTCC
    AGGAAAGCGC CATCCAAGGG GTCCAAGAAA GGGTGCATGG CTGGGAAAGG
    AGGTCCGGAA AATTCAAATT GTGCTTACCG CGGTGTCAGG CAACGGACAT
    GGGGTAAGTG GGTGGCTGAG ATCCGTGAAC CAAACCGTGG AAGGCGCCTA
    TGGCTAGGAT CATTTCCTAC TGCGCTGGAG GCTGCGCATG CATACGATGA
    GGCGGCAAGG GCAATGTATG GTCCCACAGC ACGTGTCAAT TTTGCAGATA
    ATTCCACAGA TGCCAACTCT GGCTGCACAT CAGCACCTTC ATTGATGATG
    TCTAATGGGC CGGCCACTAT ACCTTCTGAT GAGAAGGATG AGCTGGAATC
    TCCTCCTTTC ATCGTGGCTA ATGGGCCAGC TGTGTTGTAT CAGCCTGATA
    AGAAGGATGT GTTGGAACGT GTAGTCCCTG AGGTGCAGGA TGTTAAAACA
    GAAGGGAGCA ATGGCTTGAA ACGTGTTTGT CAGGAGCGGA AGAATATGGA
    GGTATGTGAA TCAGAAGGGA TCGTTTTACA CAAAGAAGTG AACATAAGTT
    ATGATTATTT CAATGTCCAT GAAGTTGTTG AGATGATAAT TGTTGAATTA
    AGTGCTGATC AGAAAACGGA AGTACATGAA GAGTACCAAG AGGGAGATGA
    TGGGTTTAGC CTTTTCTCCT ATTAGAGTAG TAGTCATGCT GCGGGTCAAT
    AGGAATATTT CATTCTAGCT GCTAGGGGAT ACTTCAAATA TCTGCAACCT
    GAAGCTTTGT AGTCATTTAC GGTTTTCGTC TTACTGGGTA ATAGCTTTAT
    ATATACTATA AGCCAACTGG TACAAGAAGT TGTACTGTGT GTTGAGTGCA
    CTGTGGTAAA AATGAATCTA TATTTAATG

    Gene models with high sequence identity

    1. AT5G05410.2 [+] show detail - DRE-binding protein 2A
      E-value: 5e-37; Score: 152.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily DNA-binding, integrase-type 2.8e-22
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.4e-16
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 7.8e-09
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 7.8e-09
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 21.825
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.1e-33
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.5e-21

    See the detailed result >

    AT5G05410.2

    Model type
    Protein coding
    Short Description
    DRE-binding protein 2A
    Curator Summary
    Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress
    Computational Description
    DRE-binding protein 2A (DREB2A); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DRE/CRT-binding protein 2B (TAIR:AT3G11020.1); Has 5407 Blast hits to 5383 proteins in 247 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5390; Viruses - 4; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR