K34919

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34919

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Original: K34919

Determination of introduced cDNA(s)

  • J023139G21 - Rice Full-length cDNAs - Original: J023139G21

    full reading [+] show sequence

    Nucleotide sequence: J023139G21 - full reading 
    GATCATTGGG ATGCTAATGA AACCAGGATA AAAGGGGATG AATTCTGAAG 
    AAAACCTGAA GAAACCAGGG GAGAGCAAAG GCTCCGTGCC AACGTGCCCG 
    CGGGGAAATG CCTCAGCCCT CAGCCATAGA CCTTACCTCA TGGCCGTCGT 
    AGCCCCTCCT TCCCTTGCCC TTCCCCAACC TCCTCAGAAC CCAACCCCTA 
    AACCTCGCCG CCGGCCGCCG CGAGACGTCG CCTCATGGAC GTCCGCCATC 
    GCGCGCCCGG CGAAGCAGGG CGACCTCCCC GCGGCGGCCG CTGCGCTCTC 
    CGCCATGCTC TCCTCCCCCG CGGCGCCCGT CCCCAACGAC GTCACCCTTC 
    TCACCGTCCT CTCCGCCTGC GCCGACTCCC CGTCCTCCCC GCTCGCCCGC 
    CGCCTCGCGC TCTCCGTCCA CGCCCGCGTG CTCAAGCTCT TCCCCTCCCA 
    CCTCCTCCTC TCCACCTGCC TCGTGCGCTT CTACTTCGCG TCCCGCTTGC 
    CCCACCTCGC CCTCCAGCTG TTCGACGCCA TGCCCGTGAG GTCCGCCGTC 
    ACCTACAACA CGGTGATCTC CGGCCTCATG CGGAACGGCC TCGTCGCCGC 
    CGCGTTCGAG GTGTTCGACG GAATGCCGGC GCCGGATAAG GTCTCCTGGA 
    CGGCTCTCAT CGACGGGTGC GTCAAGAACG GGCGCCACGA CGAGGCCATC 
    GACTGCTTCC GCGCCATGCT TCTGGACGGT GTCGAGCCGG ACTACGTCAC 
    GCTGATAGCC GTCATCTCCG CGTGCGCCGA GGTCGGCGCG CTGGGGCTCG 
    GGATGTGGGT GCACCGGCTC GTGGTCCGGC AGGGGCTGGA GCGCAACGTC 
    AGGATAGCCA ACTCGCTCAT CGACATGTAC GCGCGGTGCG GGCAGGTGGA 
    GCTCGCGCGG CAGGTGTTCA GCGGAATGAG GAAGCGGACG GTGGTCTCCT 
    GGAACTCGAT GATCGTTGGG TTCGCCGCCA ACGGCCGGTG CGCGGACGCC 
    GTCGAGCACT TCGAGGCGAT GCGGAGGGAG GGGTTCAAGC CGGACGCCGT 
    GACGTTCACC GGCGTGCTCA CGGCGTGCAG CCACGGCGGC CTCACCGACG 
    AGGGGCTAAG ATACTACGAC CTGATGAGGG CGGAGTACGG CATCGCGGCG 
    CGGATGGAGC ACTACGGCTG CGTGGTCGAC CTGCTCGGCC GGTCGGGGCA 
    GCTCGAGGAG GCGATGCGGG TGGTGACCAC CATGCCGATG CGGCCAAACG 
    AGGTGGTGCT CGGCGCCCTC CTCGCCGGCT GCCGGATGCA CGGGGACGTC 
    GGCATGGCCG AGCAGCTGAT GCAGCACCTG CTCGAGCTGG ACCCCGGCGG 
    CGACGCCAAC TACGTGCTGC TGTCGAACAT CTACGCCGCC GTCGGCAAGT 
    GGGACGGCGC CGGGAAGGTC CGGAGCCTGA TGAAGGCGCG GGGGCTGAGG 
    AAGAGGCCGG GCTACAGCGC CGTGGAGATC GACGGCGACG TGCACGAGTT 
    CGTCTCCGGC GATCGGTCGC ATCCACAGGC GGAGGAGATA TCTCAGATGC 
    TTGGGTTGCT CATGCATGAG ATGGCAGGGC ATGATTATGA CCATGTAATC 
    GATTGCTTGG ATGGGGGATG AATTCAGACC CTGGAGACTG GAGAATGCAG 
    AAGACTGATA TTCTGAAGTC AAAAGATAGC CGACGTTAGA TTAGAGAACT 
    GTTGTATATC AGTAGTTCAG TACATTTAGC TGTCCTGCCA CTATGATTCC 
    CCCTCATCTG TGTAGTCACA GGAGTGAAGT CCAACATGAA TTGAATTATC 
    GCAAAACACA CTGATTTTTC TGGACG

    Gene models with high sequence identity

    1. AT1G05750.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 1e-119; Score: 427.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SELENIUM-BINDING PROTEIN 5.1e-184
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5.1e-184
    superfamily TPR-like 3.1e-33
    ProfileScan Pentatricopeptide repeat 6.675
    ProfileScan Pentatricopeptide repeat 12.759
    ProfileScan Pentatricopeptide repeat 9.043
    ProfileScan Pentatricopeptide repeat 6.884
    ProfileScan Pentatricopeptide repeat 11.948
    ProfileScan Pentatricopeptide repeat 9.383
    ProfileScan Pentatricopeptide repeat 8.013
    ProfileScan Pentatricopeptide repeat 7.015
    ProfileScan Pentatricopeptide repeat 6.774
    HMMTigr Pentatricopeptide repeat 0.00032
    HMMTigr Pentatricopeptide repeat 5.5e-10
    HMMTigr Pentatricopeptide repeat 0.098
    HMMTigr Pentatricopeptide repeat 4.9e-07
    HMMTigr Pentatricopeptide repeat 0.061
    HMMTigr Pentatricopeptide repeat 0.13
    HMMTigr Pentatricopeptide repeat 0.56
    HMMPfam Pentatricopeptide repeat 9.1e-06
    HMMPfam Pentatricopeptide repeat 2e-08
    HMMPfam Pentatricopeptide repeat 0.00017
    HMMPfam Pentatricopeptide repeat 2.5e-06
    HMMPfam Pentatricopeptide repeat 0.053
    HMMPfam Pentatricopeptide repeat 0.26

    See the detailed result >

    AT1G05750.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Curator Summary
    Encodes a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.
    Computational Description
    pigment defective 247 (PDE247); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 41993 Blast hits to 13871 proteins in 254 species: Archae - 1; Bacteria - 18; Metazoa - 75; Fungi - 77; Plants - 41230; Viruses - 0; Other Eukaryotes - 592 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR