K34921

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34921

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34921

Determination of introduced cDNA(s)

  • J013022B11 - Rice Full-length cDNAs - Original: J013022B11

    full reading [+] show sequence

    Nucleotide sequence: J013022B11 - full reading
    TGAGGTATTC TCTTCTCTTA TCTTCTTCTA TCAAGATATA CAATGCTTCG 
    GTTTGATAGT TGCCTCAGCT GAGAACTTGG GACAGAAGAG AATTTCTCCA
    TCAGTTGTAT CATTTCTCCT TTGGAATTTA CCTTCAGTTA TAACATCTGA
    CGACCTGCAG GTCTTAAATC AATTTCAAAA GAGAAATTCA GCAATTTGGC
    TATCTTATAT GTTTTTATTG GACAATAATT GGGATATTTC TGAATATCCA
    GAAGGATAAA AAGAATTAAT AGTGCGCAGT ACACATATAG GACCCCATGT
    TTGATTACAC ACAGAAAATG AGAGATATAC CAGGTATCCA TATTTCCTAA
    AGGAGTGCAT CAACAATATT ATGAGTTCTG AGTGAAAAAT AAGAAGCAAG
    AATATGGTCT CCTATTCTCA AGTTGTCTGA AAAGATTTTG CAGCTTTCTT
    TTTTTCCTGA GCCAGCTTTG CTGGTTTTAT ATTAAACGGG GAGGAAACTG
    TACAGCATCA CCGAAAACGG TGAGAAACAG AGAAGGAGCA AAAGAAAAAA
    AAACAGAGGA GACGACGGAC AGACAAGAGG GAGCAGGGAA AAAAGCAGAC
    CTACAAGTAT CGCAGGAAGG CTACAGCATT AATCTCGCTA AATCTTTTGC
    CCCAGATCCT ATCCATGTGT TGGATTTCAT CCATATCTTC GTCACCTAGT
    GTGGCATTGC GAGTTTTTTG AAAACTCGCC GGTTTCGTTC ACACCAAATC
    TCCCAAACTT ATCAGCATGT AAAGGGAGCA CTTTGATTTT GCAGCTTTCA
    ATTGAAAACT CAAGGATTTC TGTATTCTAA TGCAGGATGT AGGTTCAGAA
    TACACAAGGG ATGGTTCAGT TGACATCAAC AAGGAGCCAG CCCTGAAGCA
    CAGCACAGGG AACTGGAGGG CGTGCTTCTT GATTTTAGGT GTTGAATTTT
    GTGAAAACAT GACCTACTTT GTAATCTCGA GGAATCTAGT CACATTCCTC
    ACCACTGTGC TCCACGAAAG CAAGGTCGAT GCTGCCAGAA ATGTCTCTGC
    CTGGGTTGGA GCTTGCTTCC TCACACCGGT TGTTGGTGCC TTTCTGGCAG
    ACACTTATTG GGGCAGATAC TGGACAATTG TTGTTTTCCT CCCGGTGTAC
    ATCACTGGAA TGCTCATCGT GACAGTTTCA GCATCACTTC CAATGTTCTT
    GACATCTTCT GAACATGGCA ATGTTCATCG TTCCGTAGTG TATCTAGGGC
    TCTATCTTGC TGCCCTTGGG AGTGGTGCAA TGAAACCATG CACTTCATCC
    TTTGGGGCCG ACCAGTTTGA TAGCACTGAT CTGGAGGAGT TACCGAAGAA
    GGCCTCCTTC TTCAGTTGGT CCTTCTACAT GACTACTGTC AGCACCTTGC
    TGTCAAGCAC AGTGCTTGTT TGGTTGCAAG ACAATGTTGG ATGGGGGGTG
    GGTTGCGCAA TCCCGACTGT GTTCATGATC ATCAGTTTCC CTGTATTCAT
    TGCCGGCTCA AGAGTTTACA GGTTTAGGAA CCTGGGATTT AGCCCCCTCA
    AGAGCCTCTG TCAGGTGATT GTTGCAGCTG TTAGGAAGTG CCATCTGCAA
    TTGCCAGAAA ATAAGTCACT TTTATATGAG CCATCCAATT CATCTTCAAC
    AACTGAAGCA AGTCATAAAA TTCAGCCCAC CAATCAATTC AGGTTCCTTG
    ACAAGGCAGC CATTGTACTG CCCCCATCAG ACGAAACGTG CATCAAGCCC
    ATGAGCTCAT GCTCGCTCTG CACAGTGACA CAAGTTGAGG AGCTGAAGAT
    GCTGCTGCGG ATGTTCCCCA CCTGGGCATC TTTCGTGATC TTTTTCGCGG
    TCAATGGGCA GATGTCCTCA ACGTTCATTG AGCAGGGAAT GGCCATGGAC
    AACCATGTTG GTTCATTTGC AATCCCACCT GCATCCCTCA CCATCATCGC
    CGTGCTCAGC GTCCTTGTCT TGGTTCCTGT GTATGAGATC ATATCAGTGC
    CACTGGTGAA GCATTTCACC GGACAGGACA AAGGCTTCTC ACATGCGCAG
    CGCATCGGAA TCGGCCTTTC ACTGTCCATG ATCATGATGG TGTACGCAGC
    ATTGCTCGAG ATGAAGCGGC TGGCAATCGT GCAATCAAGT GGCTTAGCAG
    ACCACAATGT AGCTGCTCCA ATGAGTATCC TGTGGCAGAC ACCAGCATAC
    TTTCTGCAAG GGGTTTCAGA GATTTTCAGC TGCATCGGTA TGTCTCAGCT
    CGCAATCGCT TCAGGAGCTT ACTTCAACAC GTTCGTGCTT GGCGCTGTCG
    CAGTGATCAC GACGAGCAGT GGAGCACCTG GGTGGATTCC GGATAATCTG
    AATGAGGGCC ATCTGGACTA TTTCTTCTGG ATGATGGCCA CCCTTAGCTT
    ACTTAATCTT GCCATGTTTG TGTATTCTTC CACGAGGCAC AGAGAGAACA
    CAGCTTCATG ACCAGATTTA TACATAAGAC ATGAAGCACC AACGAAATCT
    AGAGGGTTAT CATAACATCA ACGAGTTATA CAAGAGAGAT ACAATTATCA
    TTTTAACG

    Gene models with high sequence identity

    1. AT2G02040.1 [+] show detail - peptide transporter 2
      E-value: 9e-137; Score: 484.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 1.3e-264
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 1.3e-264
    HMMPfam Oligopeptide transporter 6.5e-71
    superfamily Major facilitator superfamily, general substrate transporter 2.6e-19

    See the detailed result >

    AT2G02040.1

    Model type
    Protein coding
    Short Description
    peptide transporter 2
    Curator Summary
    Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.
    Computational Description
    peptide transporter 2 (PTR2); FUNCTIONS IN: dipeptide transporter activity, high affinity oligopeptide transporter activity, tripeptide transporter activity, peptide transporter activity, transporter activity; INVOLVED IN: dipeptide transport, tripeptide transport, peptide transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G62200.1); Has 8080 Blast hits to 7668 proteins in 1494 species: Archae - 0; Bacteria - 3960; Metazoa - 799; Fungi - 488; Plants - 2224; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR