K34927

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34927

Determination of introduced cDNA(s)

J013170P13 - Rice Full-length cDNAs - Original: J013170P13

full reading [+] show sequence

GTTTCGAGAC GGAGACGCCG CCTGCCTAAT CTCCTCGACT CGATCTTTCC 
TTCCCAGGAG GCGGAGGAGG GAGGAGGAAG AGGAGCTATC GCCTCTCTCG 
CTGACGCCCG CACCACGACA CGGCGATAGA GACAGAGGTG GGAGATCGGA 
GATGAGGAAG CTGGTCCCCT CGCCGTCCCT GCCGACGGCG ACGGCGCTCG 
CGGGTACGCC GGAGATGGCT GCCGTGGCGC TGGCGCTGGC GCTGCGGGGT 
TGGTGGGAGG AGGTGAACGG GTCGCCGGCG TGGCAGGACG GCGCCTTCTT 
CTCCCTCTCC GCCGCCTACG CGCTCGTCTC CGCCGTCGCG CTGGTTCAAT 
TGATCAGAAT TCAGTTGCGA GTGCCTGAAT TTGGTTGGAC TACCCAGAAG 
GTTTTCCATC TGATGAACTT TGTTGTAAAC GGAGTTCGTG CTGTCGTGTT 
TGGATTTCAT GCTCAAGTGT TCCTTTTTCA AACAAAAGTG TATACTTTGG 
TGTTATTGGA TCTTCCTGGT CTTCTATTTT TCTCGACATA CACGCTACTT 
GTGCTGTTCT GGGCAGAAAT ATACCATCAG GCTAAGAATC TTCCCACTGA 
CAAGCTAAGG ATTATATACA TGGCAGTTAA TGGTGTTATA TATGTAATCC 
AGGTTTGTAT TTGGATATAC CTTGGGACAA ATGATAGTCC TCTGCTAGAG 
CCTGTGAGCA AAATTTTTAT ATCAGTTGTC TCATTCTTAG CTCTTTTGGG 
ATTCTTAATT TATGGTGGAA GGCTATTTTT CATGCTGAGG CGTTTTCCGA 
TTGAATCAAA GGGCCGCAGA AAGAAGCTCT ATGAGGTTGG GACTGTGACA 
GCAATTTGCT TCACATGTTT CTTGATAAGA TGCATTGTGG TGAGTGTATT 
TGATCCCTTT TGGCATGCAA ATATTTATTG TTAATAGTAC ATCAGACATA 
CAGTCACAAA AGTTATCACT CTATTTAATG TCCACATATC TTATCTTACC 
CCCACATTTC TTTGATATTT TATTTTGTGT TATGTATATA ATTTTATATT 
TGTATTAATG CAAAGTAATG TCAAATTTAA CGAATTAAAT TGTTATTAAT 
GATGATTAAA TTTGATTATA TCAGAAATTT CAGACATGCC AAAAGTATAC 
ATAATAAAAT TATCTCAGTT TTTTTTTCTT GTAGTTCAGT TTGATTATGC 
ACATGTCTGA TTCCCAAATG CAATAAATTG TCATCTGATT GGTTCAGTTC 
GATTATGTCA TCTGATTGCC TTTTTTTTTA CTCGAAAACA GCAGGAGAGG 
CTCCTACTGT ATTTTCTATT TAAAAGATCC ATACCTTTAG CCTTTAAGCC 
TTTAGCAGTT GCAGTTCAAT ATGAGGCACC TTTAGCCTTT AGCATCCATA 
GTTCAAAGAT CCTGCACAAA GGGGTGCTGT CATATTCCCA TTTATCATTA 
TTTTTCCCAT AAATTCATAA CTATACATCG CATTAATACG GTGATAGGTG 
GCGATGTCAT CATTTGATCC TGATCTATCT CTTGAGGTTT TGGATCATCC 
AATACTGGAT TTCTTTTACT ATATGTTAAC GGAGATACTG CCCTCTGCTC 
TTGTCCTATT CATCCTCCGT AAGCTTCCAC CGAAACGAGT ATCAGCACAG 
TACCACCCTA TTCGTTAGAA GGGCTGGTTT TGTCGTCACA AGCATTCCAA 
AAACTTGTTT CAGAGCGAGA ATTGTGATAT TTGAGCTGAG CTTCAAGTAG 
TTTTGATGGG TCATCTATGT CATGCTTCTG ATGTGGAAGA GGTTTTTTTG 
TCCTCTCCTG ACCCATTTTT CTGGGCTTTA TATTTCTTGA GACCAGAATA 
TTATCAGATG ATTTATACTT TGTTCTGCCT AACAAAACTT ACCGTTGGGA 
GTTAATTACA TCAGTAACTT ATAAATTTG

Gene models with high sequence identity

AT4G21790.1 [+] show detail - tobamovirus multiplication 1
E-value: 4e-80; Score: 296.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF1084	8.19999999999997e-21
HMMPfam	Protein of unknown function DUF1084	9.4e-107

See the detailed result >

AT4G21790.1

Model type: Protein coding
Short Description: tobamovirus multiplication 1
Curator Summary: encodes a host factor that is required for TMV virus multiplication.
Computational Description: tobamovirus multiplication 1 (TOM1); INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: vacuolar membrane, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication protein 3 (TAIR:AT2G02180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR