K35006

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35006

Determination of introduced cDNA(s)

J013111M09 - Rice Full-length cDNAs - Original: J013111M09

full reading [+] show sequence

GAGGGGCCAT GAACTTTCAC ACTCCTCTCT CTCTCTCTCT CTCTCTCTCT 
CTCTTCCAGC TGAGTGAGCT GCTTGCACGC CGCCTTCCTG CTCGTCGCCT 
TTCGCCGCCG CCATCTCTCT CTACTCTACT CTAATGCCTC GGCGCCTTTA 
CTAGTTAATT AGTTCTTCTT TAGCATCGTA CCATAATCTG CCCACACGGC 
TACAGACTCT TGATTGGTTT GAGATTGAGC TATTGGGTTG GTTCTTGGCA 
AGAGAAGGCA AGGCCAAGAA AGGTGGCAGG TTCTTGTCAA TCTCCAAATT 
TTCCCATTAA ATTTGCGATT TCTTCCCCAC TCCTCCCCGT CAGAACCGAG 
GTTTTACCAG GAGTGCTTCA GCATTTGGGG TGTGGAGTTA TTGCAAAGCA 
ACCTCGATTC CTGCACCGGT TCCTCGATTT GATGCTGAAG AAATTGAGCA 
AAGCTGGTCT TCGTTTTGGT AAAACCCCCA GCTTTCTCAG GGCGGAACAG 
TAGAAGAAAA AGATTGGAGG AGAGGAGAGG AGAGGAAGGG TTGGTTTTGG 
GAGGATGATT CAGCTGCTGT TCTTGGTGGT GTTGGCGGAG GCGGCGGTGG 
CGCTGCTGCT GATGGTGAAG GTGGGGCCGC TGCGGGAGGT GGCGATGCGC 
GGCGTGGAGC AGGCGAAGAC GGGGAAGGGC CCGGCGACGG TGAAGACGCT 
GGCCTGCACG CTCTCGGTGA TCCTCATGTC CAGCGTCGCC AGCATCCTCA 
AGATCCAGAA CAGGGGCCTC AAGCTCGGCA CCGTCAGCCC CATGGACCAG 
GTGCTATGGC GGACTCACCT CCTCGAGGCC TCCCTCATCG GATTTACTCT 
ATTCCTTGCA TTTGTCATTG ACCGGTTGCA CCACTACCTC CGAAAACTGA 
TTACACTGAG GAAAGCAGCC AACACATCAA GAGAGGAGGT CGAGAAACTT 
CAAATGGAGA ACCGGTTATT CCGTGAAAAG GAGGAGAAAT CTTCCAGTGA 
AATCAAGAAG CTCCACCAGG AGATTGCTAA GCTAAACGAG AGTATGAAGA 
AGCTGAAATC GGAGTCTGAA GATCACGAGA GGAAGGTGTT GGAAGCGGAG 
GCCCATGTGA ACGCCCTACA GAAGCAGTCG GAGGAGCTTC TCCTGGAGTA 
CGACAGGTTG CTGGAAGACA ACCAGATTCT ACAATCTCAG CTTCACTACA 
AAGGCTGAAA CAGTTAACCT GGGGCATGCA ACTCAAAGTG CTCGTTACCA 
AGACTCGTAG ACTTACCAAA TGTCAGTGCA GAGCGAAGGT ATTGGTGAAT 
GTGATGCTTG GAATCCTTGC TCTAACTTGT GGTGTTGGGT TGATGTACTA 
GTGTGTGCAT TTGTAGTTTT GAGGAGTATA AAAGCCAGGG ATGATATATG 
GTGAAATGGT TATGAATCTG GTATCAGTTC ATGTCGCCAT GCAGGGTTGT 
TGATCTGAAA ACTGAATTGA ACTTGTGGGC TGCGGCCATG CCTCTATTCA 
GGCCTTGATC TGAAAATCTG AAAAGGAGGA AAGTTTCCTA CTGAAATGAA 
TGCTCTGTTA GCTTTGCTAA AACCGGGCTA GGATGGATCG TTTTATTTGT 
GTGAATAACT TAGAATATAT TCTGGTTTAC TGTGC

Gene models with high sequence identity

AT5G48660.1 [+] show detail - B-cell receptor-associated protein 31-like
E-value: 8e-51; Score: 198.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	BCR-ASSOCIATED PROTEIN, BAP	9.9e-85
HMMPanther	B-cell receptor-associated 31-like	9.9e-85
HMMPfam	B-cell receptor-associated 31-like	1.1e-08
Coil	coiled-coil	0

See the detailed result >

AT5G48660.1

Model type: Protein coding
Short Description: B-cell receptor-associated protein 31-like
Computational Description: B-cell receptor-associated protein 31-like ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: B-cell receptor-associated protein 31-like (TAIR:AT3G07190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR