K35012

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35012

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35012

Determination of introduced cDNA(s)

  • J033071G14 - Rice Full-length cDNAs - Original: J033071G14

    full reading [+] show sequence

    Nucleotide sequence: J033071G14 - full reading 
    GAGTTCCAAC CATTTCCACC ACCATCACCA CCCTCCACCT CCGCCTCCGC 
    CACAGCCGCG CCGCGCCGCT CCCCTCCGCC GCCGCCCGCG ATGGCCGCGG 
    CGGCGATCCA CCAGTTCGCC GAGTGCATCA CCTGCCACGC GTGGAGCCCC 
    GACCACTCGA TGATTGCCTT TTGTCCAAAC AACAATGAAG TACATATCTA 
    TAAGTTTTTT ACTGACAAGT GGGAGAAACT TCATGTTCTT TCAAAGCATG 
    ATCAAATAGT ATCTGGAATA GATTGGAGTA GATCTTCCAA CAAGATCGTA 
    ACGGTCTCAC ATGATAGAAA TTCATATGTT TGGACACAAG AGGGCCATGA 
    TTGGGTTCCT ACCCTTGTTA TTCTCAAGCT AAATCGTGCA GCTTTATGTG 
    TCCAGTGGAG CCCAAAAGAA AACAAGTTTG CCGTAGGAAG TGGTGCTAAG 
    TCTGTGTGCA TTTGCTACTA TGAACAAGAC AACAACTGGT GGATTAGCAA 
    GGTTGTTAGG AAGAAGCATG AATCTTCTGT CACTAGTGTT GCATGGCATC 
    CAAACAATAT ACTTCTTGCA ACAACATCAA CTGATGGTAA ATGCAGAGTG 
    TTATCCACTT TCATCAAGGG TGTCGATACA AGGGGATCAC ATGCGAGCAC 
    TTCTACTGAT TGGAAATTTG GAGAGCAAAT TGCTCAGCTT GACCTATCAT 
    CTATGTGGGC ATTTGGTGTA AGGTGGTCGC CAAGTGGAAA GACACTAGCC 
    TATGCAGGGC ACAATTCCAT GATTTATTTC ATTGATGATG TTGAAACGTC 
    TCCTGCTGCA CAGAATTTAG CACTGCGTGA TCTGCCTCTC CGTGATATTC 
    TTTTTCTTTC TGAAAGGACG GTGATTGGTG TTGGATTTGA TTGCAATCCT 
    ATGATCTTTT CTGCAGATGA GACTGGACTT TGGAGCTTTG TCAGATACTT 
    GGATGAAAGA AAAGTAACTA CATCAACTTC AAGAGCTTCA CAGCTATCTG 
    AAGCCTTCGG AAAGCTATAT GGCCAATCAA AGCAAGTGGC AAGCAGTGAT 
    ACTGTTGAAC CATCAAAGCC TCGTGGTGGT GTTCATGAGA ATTGCATAAC 
    TTGCATCGTG CCATTGAGAA AAGGAAACGA CAGTATTGTC AAACGGTTCA 
    GCACGTCAGG ATTGGATGGT AAGATTGTGG TATGGGATGC AGAAAACCAC 
    ATCGACATTA AAAAATAGCT CCAGGGAAGG TTTCTGATCA ATCACATCCA 
    ATGAACTTAT ATTGATGCAT GGAAACAATG GCAACGAGCC CTGCAGGTTT 
    TAAAGATCCA GGGCTAGGGA GGAGAATGCT TGTTTTTTGT TGTACCTGTA 
    CACAAACCAT TTCTTTAGCT GGCTCTTTAG CATAGAGGCT ATTGGGATCT 
    CTATAAGTTG GCTTCATTTT TTTGGGGAGT AACTCGGTCT TGAATTAATA 
    TTGTGTAATA CCTGTAAAAT CCTAGCTAGG CAATTACATA AATTCGACAT 
    CTCATCCCAA GTGTTTCGCG GTATTCTGTG TAAAATAACC ACACGTGGAA 
    TTCACCC

    Gene models with high sequence identity

    1. AT2G31300.1 [+] show detail - actin-related protein C1B
      E-value: 3e-161; Score: 565.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily WD40 repeat-like-containing domain 2.9e-57
    ProfileScan WD40 repeat 2 10.007
    ProfileScan WD40 repeat 2 9.339
    ProfileScan WD40-repeat-containing domain 11.102
    HMMPanther ARP2/3 COMPLEX SUBUNIT 8.3e-241
    HMMPanther ARP2/3 COMPLEX SUBUNIT 1 8.3e-241
    Gene3D WD40/YVTN repeat-like-containing domain 3e-74
    HMMPfam WD40 repeat, subgroup 0.0001
    HMMPfam WD40 repeat, subgroup 1.5
    HMMPfam WD40 repeat, subgroup 2e-07
    HMMPfam WD40 repeat, subgroup 0.46
    HMMPfam WD40-like Beta Propeller 0.18
    HMMSmart WD40 repeat 160
    HMMSmart WD40 repeat 0.00051
    HMMSmart WD40 repeat 13
    HMMSmart WD40 repeat 0.00039
    HMMSmart WD40 repeat 1.3
    HMMSmart WD40 repeat 38

    See the detailed result >

    AT2G31300.1

    Model type
    Protein coding
    Short Description
    actin-related protein C1B
    Curator Summary
    putative ARP2/3 protein complex subunit p41
    Computational Description
    actin-related protein C1B (ARPC1B); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1A (TAIR:AT2G30910.3); Has 4117 Blast hits to 2979 proteins in 306 species: Archae - 4; Bacteria - 869; Metazoa - 1495; Fungi - 819; Plants - 455; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR