K35016

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35016

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35016

Determination of introduced cDNA(s)

J013000B09 - Rice Full-length cDNAs - Original: J013000B09

full reading [+] show sequence

GGTAAGCTTA TCAAAAAAAA AAGAAAAAAA AGAAGTGAAG AAGACGGAAC 
GGTGGGGCTG TCGAAGCATC CGCGTCCTCC GGGCTCCGGC GACTCCGCGG 
CCGCGATCTC TTCGGCTCTC CCCGCCGGAG ACGGCCACCG CGTCGCCTCC 
CCCTTCAACC GCCTCGATCC CTTCCTGTTC TTTCGGTATT TTGGTGTAGT 
TTGCACTGGT TTCTGGATTT CTTGACAAAA TGGTGAAGCT GACAATGATA 
GCACGTGTTA CTGATGGCCT TCCACTGGCA GAAGGGTTGG ATGATGGACG 
GGATCAGAAG GACGCTGACT TTTACAAGCA GCAAGCTAAA CTTCTATTCA 
AAAACTTATC AAAGGGGCAA CATGAAGCCT CGCGGATGTC AATTGAGACT 
GGGCCATACT ATTTTCAGTA TCCTTATGTT CTCTGTGGCT ATTTTATTCT 
GGGTATTGTT CATGACTGTT GAATTTGTTT CTGTTCTTTT GCAGTCCGTG 
TGATATAGCA TATCTGGCTG CTAAATATTG ACATCTGAAT GTGCACAGTC 
ATTCGGATAT TTTTTTTTAT CAAGTTCACA CGTTGCATCT CATTACATTT 
CTTTGCTGGT AATGAAGATT TCAAATATGC TGGATAGTTG TATAGCTACA 
CAGGTAAACA AGAAAATGGG TAGGCATTTG ATGAATCTAT GTGATTGGTC 
CAAATTATCA ATCATGACTG TACAATAGCT AGTCTATATA TTCTCTAGTA 
TTTCTCTATT TTCTATAGCA TTCACTTAAT TTTTAGGATC TTACAACTTG 
CAAGCACATG GTACTTATTT GATGCTCTTG TTGATCTTGC TATTAATATT 
TGAGTCCATT TATCATTACT AACTTTAAGA TCATAAGCTT ATTTAACCTG 
AGACTTACAT CGTGTTCTGT TGAGAAAAGG CAGCACTCAG CACCCAGCTA 
ATGTTGTTCT TGTAATGCAT GTTTTAGCTT GTATTGGTTT GCTAAGTTTA 
TTGCAGTGTG ATCTTGTTGA ACCTTAATTC AAATAAACAG TTACATCATT 
GAGGGGCGAG TATGCTATCT GACTATGTGT GACCGTTCTT ATCCAAAGAA 
ACTCGCATTC CAGTACCTAG AAGATCTGAG AAATGAATTC GAAAGAGTCA 
ACGGCAGTCA AATCGAAACA GCTGCAAGGC CGTATGCGTT TATTAAGTTT 
GAACCCAGAG GAATCTTGCG AAATTAAATG ATGAGCTCTA TGAGGTGCAT 
CAAATTATGA CTCGTAATGT TCAAGAAGTT CTTGGTGTCG GTGAAAAGCT 
AGACCAGGTC ACTGAAATGT CAGCTAGGCT GACTTCTGAC ACAAGAATCT 
ATGCAGATAA GGCTAAGGAT CTCAATCGCC AGGCCTTGAT TCGGAAGTAT 
GCCCCTGTTG CCATTGTGAT CGGTGTAGTT TTGATGCTCT TTTGGTTGAA 
GAACAAGATA TGGTAACTGC ACTAAACTAA GGAAGCTGGG CCTGCATTAC 
CACACTGGTG CAAGAAAAAC CGAAAATTTA GGTAGATTCT GGATCAAGAG 
ATATCAAGAG ATGCTTTGGT GACTTGTATC CCGTATCTGC CCATTCAAGC 
GACTACTTCA GCTGCCTTTC ACCCTCCTCC CGACAAGCTA TTCAAGCCAA 
TTCGTTGTAG CATACAGTAG ACCTTATAAC GGAACTCGGA CTTGATTTTG 
TGAACCCTTG GAACCGTATA TACAAGAGCT CTGTAGAGTT GAATTTTTTT 
ATATTGGGAT GATATTGCAT TTTATTTTGC AAACTCATGT AAGAATTCAG 
GCTGAATATC CTATATTACA ATATCTCTGC TGCATGTGAC TC

Gene models with high sequence identity

AT1G11890.1 [+] show detail - Synaptobrevin family protein
E-value: 1e-64; Score: 108.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Longin-like	2.19999900980708e-16
ProfileScan	Longin	0
HMMPanther	PTHR21136:SF4	1.10000150671642e-24
HMMPanther	PTHR21136	1.10000150671642e-24
Gene3D	Longin	2.19999900980708e-16
HMMPanther	SNARE PROTEIN SEC22	6.8e-14
HMMPanther	SNARE PROTEINS	6.8e-14
HMMPanther	SNARE PROTEIN SEC22	4.1e-26
HMMPanther	SNARE PROTEINS	4.1e-26
HMMPfam	Synaptobrevin	8.9e-19
ProfileScan	Longin	11.494
ProfileScan	Synaptobrevin	13.902
Gene3D	Longin	6.2e-09
Gene3D	no description	2.2e-07
superfamily	Longin-like	6.1e-09

See the detailed result >

AT1G11890.1

Model type: Protein coding
Short Description: Synaptobrevin family protein
Curator Summary: member of SEC22 Gene Family
Computational Description: SECRETION 22 (SEC22); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52270.1); Has 1577 Blast hits to 1577 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 342; Plants - 449; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
Link: InterPro Scan - TAIR