K35021

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35021

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35021

Determination of introduced cDNA(s)

  • J033147C23 - Rice Full-length cDNAs - Original: J033147C23

    full reading [+] show sequence

    Nucleotide sequence: J033147C23 - full reading 
    GATCGGCACC CCCATCGCCA TCGGCACCAT CACCAACTAC GCCATCAGCT 
    ACGTGACCAC CATGTTCATC GGCCACCTCG GAAACCTCCC CCTCGCCGCC 
    GCCTCCGTGG GCCTCTCCGT GTTCGCCACC TTCGCCCTCG GCTTCCTCCT 
    GGGCATGGGC AGCGCCCTGG AGACGCTGTG CGGGCAGGCG TTCGGAGCCG 
    GGCAGGTGTC CATGCTGGGC GTCTACCTCC AGCGATCCTG GATCATCCTT 
    CTCGGCGCCA CGGTCCTGAT GGTCCCCGTG TACGTGCTGG CCGAGCCGCT 
    GCTCCTGCTG GTGGGGCAGG ACCCGGAGGT GGCGCGCGCG GCGGGGCGGT 
    TCACGCTCTA CATCCTCCCG GGCGCCTTCG CCTTCGCCGT GAACTTCCCG 
    TCGGGCAAGT TCCTCCAGGC GCAGAGCAAG GTGGGGGTGC TGGCATGGAT 
    CGGCGTGGCG GGGCTGGCGT TCCACGTGGG CATCACCTAC CTCGCGGTGT 
    CGGTGCTGGG GTGGGGGCTC CCGGGCGCGG CGGCGGCGTA CGACGTGTCG 
    CAGTGGGCGT CGTCGCTGGC GCAGGTGGCC TACATAATGG GGTGGTGCAG 
    GGAGGGGTGG CGCGGGTGGT CCATGGCGGC GTTCCACGAC CTGGCCGCCT 
    TCCTCCGCCT GTCCATCGAG TCGGCGGTGA TGCTGTGCCT CGAGATATGG 
    TACCTGGGCC TCATCACCGT CCTCACGGGG GACCTGGACG ACGCCCAGAT 
    GGCGGTCGAC TCGCTGGGGA TCTGCATGAA CATCAACGGC TACGAGGGCA 
    TGATCTTCAT CGGCCTCAAC GCGGCCATCA GCGTCCGGGT GTCCAACGAG 
    CTGGGCTCCG GGAGGCCCAG GGCGGCCATG CACGCCGTGG TGGTGGTGGT 
    GGCGGAGTCG CTGCTCATCG GCCTCCTCTG CATGGCGCTC GTGCTCGCCT 
    TCAGCGACAA GCTGGCGCTC GTCTACACCA GCGACGCCCA CCTGCTCCGC 
    GCCGTCTCCA GGATCGCTGG CCTGCTCGGG GTCACCATGG TGCTCAACAG 
    CGTGCAGCCG GTGCTGTCCG GTGTGGCCGT CGGCGGCGGA TGGCAGGGCC 
    TCGTCGCCTA CATCAACCTC GCCTGCTACT ACCTCTTTGG CCTCCCCGTC 
    GGCTACCTTC TCGGTTACTA CTTCAACCTC GGAGTCGGGG GGGTTTGGGG 
    TGGCATGCTC TGTGGAGTTG CACTTCAAAC ACTCATTCTA CTCTTTGTAG 
    TCTGGAGAAC AGACTGGAAG GCAGAGGCTG CGCAAGCTTC AGCTCGTGTG 
    CACAAGTGGG GAGGCACAGA TGAAACCAAA CCTCTCTTAC AAGGAGATCA 
    TTCAGACAGA GATTAGCATA TGCATACCCT GTTTCTCTTT TTCTTTTCCC 
    CCTGCGCAGA GCAGATACGA AGTTGGACTC CAAATTCAAT TCTTATCCTG 
    CATGTACCAG GCAGCTCTGT ATTCTTCAAT TGTACGATTT TTGTATACGC 
    TACTGGGTCA CAATTTATTA ACATTGTACG CTATTGGGGA TTTGGGGTTC 
    TTCCCTCCCT CTTCTATTTA TTATTACAAA CAAGAATACA ACAGACC

    Gene models with high sequence identity

    1. AT4G00350.1 [+] show detail - MATE efflux family protein
      E-value: 4e-147; Score: 518.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Multi antimicrobial extrusion protein MatE 3.6e-30
    HMMPfam Multi antimicrobial extrusion protein MatE 1.5e-37
    HMMPanther MULTIDRUG RESISTANCE PUMP 7.5e-228
    HMMPanther Multi antimicrobial extrusion protein MatE 7.5e-228
    HMMTigr Multi antimicrobial extrusion protein MatE 6.7e-76

    See the detailed result >

    AT4G00350.1

    Model type
    Protein coding
    Short Description
    MATE efflux family protein
    Computational Description
    MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR