K35036

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35036

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35036

Determination of introduced cDNA(s)

  • J033148H10 - Rice Full-length cDNAs - Original: J033148H10

    full reading [+] show sequence

    Nucleotide sequence: J033148H10 - full reading 
    GATTCTGAAA ACTTCAGTCT TTCTCTCTTC AGCATCTCTA CTCTCGCTCC 
    ATTTCTAAGG GATCGAAATG ATGGAGGCGA AAGACGGGCA AGCATGGCTG 
    GGGACGAACG GATACGGCAG CAGGAGGGAG GAAGACGGCG TGTGCCACGA 
    CGACAGCGCG ACACCGGTGA GGGCGAACAC TGTCGACGAG CTACACTCGC 
    TGCAGAGGAA GCCTCAGGTA GTGGAGGATC GCCACAGGCT GCAGCTTCAG 
    TCCATCAGTG CGTCTTTGGC ATCGATGACA TGTGGGATTG GGCCAAAACT 
    CGTCAACGGT GACCCAGCAA GGAAAAAAGA AATGGCTGGC AAGGCTGTGA 
    CACATCACCA ACACCATATC ACTGTCCCCA CGATCACTGT GAGCGACAGT 
    GACCTCAAGT TCACCCATGT TCTGTACAAC TTATCCCCTT CTGAACTTTA 
    TGAGCATGCA ATCAAATATG AGAAAGGGTC ATTCATCACA TCCAGTGGGG 
    CGTTAGCGAC GCTATCAGGA GCAAAGACCG GTCGATCACC TAGGGACAAG 
    CGTGTTGTCA AGGATGAAAC AACAGATGAT CTGTGGTGGG GCAAGGGATC 
    ACCAAACATT GAAATGGACG AGCAAACCTT TCTGATCAAC AGGGAGAGAG 
    CTGTTGACTA CTTGAACTCC CTTGATAAGG TGTTTGTTAA TGATCAGTTC 
    CTAAACTGGG ACCCCAACAA TAGGATAAAA GTTCGAATCA TCTCTGCGAG 
    GGCCTACCAT TCTCTCTTCA TGCACAACAT GTGCATCCGG CCAACATACG 
    AGGAACTAGA GAATTTTGGC GAGCCCGACT TCACCATCTA CAATGCTGGA 
    CAGTTCCCGT GCAACCGTTA CACGCATTAC ATGACATCGT CAACTAGCAT 
    AGACTTAAAT CTTAAGCGGA GAGAAATGGT CATCCTGGGA ACACAATATG 
    CTGGAGAGAT GAAGAAAGGC CTCTTCAGTG TGATGCACTA CCTCATGCCC 
    AAAAAGCAGA TCCTCTCGTT GCACTCTGGC TGCAACATGG GCAGAGGGGG 
    TGATGTAGCC CTGTTTTTTG GATTGTCAGG TACTGGAAAG ACAACTCTGT 
    CAACAGACAG GAATAGGATC TTAATTGGTG ATGATGAACA CTGCTGGAGT 
    GATAATGGTA TCTCTAACAT TGAGGGCGGC TGCTATGCTA AATGCATAGA 
    TCTTTCTCAG GAGAAAGAAC CTGACATTTG GGATGCAATC AAGTTTGGCA 
    CAGTGTTGGA GAATGTTGTT TTCGATGAGC ACTCCCGTGA AGTTGATTAT 
    ACAGAAAAAT CTGTCACAGA GAATACCCGT GCTGCTTACC CTATTGAATA 
    CATAGCTAAT GCTAAGATAC CATGTGTTGG GCCACACCCA AAGGATGTTA 
    TCCTACTTGC ATGTGATGCA TTTGGTGTCC TCCCTCCTGT CAGCAAGTTG 
    AGCCATGCAC AAACCATGTA CCATTTTATC AGTGGCTACA CTGCATTGGT 
    CGCTGGAACT GAAGATGGTA TCAAGGAGCC ACAGGCTACA TTTTCTGCCT 
    GCTTTGGTGC AGCTTTTATA ATGCTCCACC CAACTCGGTA CGCTGCCATG 
    CTGGCAGATA AGATGAACAA GCATGGAGCT ACCGGATGGC TTGTCAACAC 
    TGGTTGGATC GGGGGGAGTT ATGGTGTAGG TGAGCGAATC AGCTTGGCCT 
    ACACAAGGAA AATCATCGAT GCCATTCACT CGGGTGAGCT TTTGGCTAGA 
    AGCTACAAAA AGACAGATGT CTTTGGACTA GACATCCCCA CAAAAGTGGA 
    AGGAGTTCCA TCTGAATTGC TTGACCCAAT AAATACCTGG GAAGACAAAG 
    ACTCATACAA GTTGACACTT CTAAAGCTGT CAGATCTGTT CAAGAGAAAT 
    TTCAAGGTAT TTGCAAATTA CAAGAAAGGT GGTGTTAGTG ATCTGGCTGA 
    TGAGATTGCT GCTGCAGGAC CAAATTTCTG ATTTTAATTG AATAGTAGTA 
    GTATGTCTTA ATGTATACCA AATAAAAGGG ATTTTTTTAT GTTCCTCGAG 
    GATGTATCGC AAGGTACCAC TTATTTTAGT GTAAATTTTT ATACCTCATG 
    GTACTTCTCT AGTGTAAAGT ACCAAAAAGT ATCATAAATT AACACTAAAA 
    TATGGTATCT CTCGTTACCT AGTCTTGTAC GGTAAAACTG AACAAAATGC 
    CCATTTTGAG GATGGTGACA TATATATATT AAAAGCTATT TCAGAGTGAT 
    GT

    Gene models with high sequence identity

    1. AT4G37870.1 [+] show detail - phosphoenolpyruvate carboxykinase 1
      E-value: 0; Score: 951.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Phosphoenolpyruvate carboxykinase, N-terminal 2.9e-66
    Gene3D Phosphoenolpyruvate carboxykinase, C-terminal 1.3e-104
    HMMPfam Phosphoenolpyruvate carboxykinase, ATP-utilising 4.7e-211
    HMMTigr Phosphoenolpyruvate carboxykinase, ATP-utilising 8.8e-279
    superfamily PEP carboxykinase-like 3e-89
    superfamily Phosphoenolpyruvate carboxykinase, N-terminal 5.1e-74
    HAMAP Phosphoenolpyruvate carboxykinase, ATP-utilising 47.631
    PatternScan Phosphoenolpyruvate carboxykinase (ATP), conserved site 0
    HMMPIR Phosphoenolpyruvate carboxykinase, ATP-utilising 0

    See the detailed result >

    AT4G37870.1

    Model type
    Protein coding
    Short Description
    phosphoenolpyruvate carboxykinase 1
    Curator Summary
    Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).
    Computational Description
    phosphoenolpyruvate carboxykinase 1 (PCK1); FUNCTIONS IN: phosphoenolpyruvate carboxykinase activity, purine nucleotide binding, phosphoenolpyruvate carboxykinase (ATP) activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, response to cadmium ion, cellular response to phosphate starvation, gluconeogenesis; LOCATED IN: cytosol, nucleolus, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoenolpyruvate carboxykinase, N-terminal (InterPro:IPR008210), Phosphoenolpyruvate carboxykinase (ATP), conserved site (InterPro:IPR015994), Phosphoenolpyruvate carboxykinase, ATP-utilising (InterPro:IPR001272), Phosphoenolpyruvate carboxykinase, C-terminal (InterPro:IPR013035); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxykinase 2 (TAIR:AT5G65690.1); Has 4504 Blast hits to 4501 proteins in 1411 species: Archae - 21; Bacteria - 2559; Metazoa - 2; Fungi - 139; Plants - 194; Viruses - 0; Other Eukaryotes - 1589 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR