K35040

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35040

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35040

Determination of introduced cDNA(s)

  • J013089L11 - Rice Full-length cDNAs - Original: J013089L11

    full reading [+] show sequence

    Nucleotide sequence: J013089L11 - full reading
    GTTCCTGCTA CGCATACTCT CCCCTCTGAC TCTTTGCGCC AAGTCAATCT 
    CCCCGTCTGT CTTCTCGGCC TCAACTCCCG TCTCCTCGCT AGTTCGCCCG
    CCGCGCCGCC TGCGTCGATT TCAGTCCATC CTGCGGAGGG GAGCAGCGGT
    GGGTGCCGTC CTCCTGCTGC TTCCGCCTCC GGTAATTAGG TTTGTTCGTT
    GAGACGACAT GCCTAAGATA AAGACAAGCC GTGTCAAGTA TCCTGAAGGA
    TGGGAGCTTA TAGAACCAAC TCTGCGTGAT TTGGAAGCCA AGATGAGGGA
    AGCCGAGAAT GATCCACATG ATGGGAAGAG GAAGTGCGAA GCTCTCTGGC
    CAATCTTTCG TATTTCTCAT CAAAAAAGCC GTTACATATA TTATCTTTAC
    TATCGAAGAA AGGAGATATC AAAAGAGCTG TATGAATTTT GTTTGGACCA
    AGGTCATGCT GATAAAAATC TGATCGCGAA GTGGAAAAAG CCAGGTTATG
    AGCGTCTTTG CTGCCTCCGA TGCATACAGA CACGAGACCA CAACTTTGCA
    ACCACTTGTG TCTGTAGGGT CCCCAAGCAC CTCAGGGAAG AAAAGGTTAT
    AGAGTGTGTC CATTGTGGGT GCAGAGGGTG TGCCAGTGGT GATTGAAGTC
    GCTGTCCTGT GGCTACAAAT AATCTGAGAG TAATCGCTCG AGATGTTTCC
    TTGTGTTTGA TCTCTGTTAA GACAAGCACC ATATGACCAT ATAATCAGGC
    GATTCGTGTG GTGTACTGTA AACTCTTGGG CTATGGCATG TGTCTGGTGA
    GTAATGACGA TTTCTCAACA TGTTGTGTTC GCAAATGGTT CAGTAGAAAC
    TAGCTGGAAG TTTGATGGAT TACTGTACCC CGCTAGACCT ACTTACTACA
    ATACTACTGT ATGAACACTT CCTTGCTACA GAGGTATTAG GATGATGTTG
    AGTTATCAGG TTTTCT

    Gene models with high sequence identity

    1. AT4G21110.1 [+] show detail - G10 family protein
      E-value: 6e-77; Score: 284.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam G10 protein 3.8e-61
    HMMPanther G10 protein 3.4e-91
    FPrintScan G10 protein 5.7e-58
    FPrintScan G10 protein 5.7e-58
    FPrintScan G10 protein 5.7e-58
    FPrintScan G10 protein 5.7e-58
    FPrintScan G10 protein 5.7e-58
    PatternScan BUD31/G10-related, conserved site 0
    PatternScan BUD31/G10-related, conserved site 0

    See the detailed result >

    AT4G21110.1

    Model type
    Protein coding
    Short Description
    G10 family protein
    Computational Description
    G10 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: G10 protein (InterPro:IPR001748), BUD31/G10-related, conserved site (InterPro:IPR018230); Has 466 Blast hits to 466 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 126; Plants - 80; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR