K35040

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35040

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35040

Determination of introduced cDNA(s)

  • J013089L11 - Rice Full-length cDNAs - Original: J013089L11

    full reading [+] show sequence

    Nucleotide sequence: J013089L11 - full reading 
    GTTCCTGCTA CGCATACTCT CCCCTCTGAC TCTTTGCGCC AAGTCAATCT 
    CCCCGTCTGT CTTCTCGGCC TCAACTCCCG TCTCCTCGCT AGTTCGCCCG 
    CCGCGCCGCC TGCGTCGATT TCAGTCCATC CTGCGGAGGG GAGCAGCGGT 
    GGGTGCCGTC CTCCTGCTGC TTCCGCCTCC GGTAATTAGG TTTGTTCGTT 
    GAGACGACAT GCCTAAGATA AAGACAAGCC GTGTCAAGTA TCCTGAAGGA 
    TGGGAGCTTA TAGAACCAAC TCTGCGTGAT TTGGAAGCCA AGATGAGGGA 
    AGCCGAGAAT GATCCACATG ATGGGAAGAG GAAGTGCGAA GCTCTCTGGC 
    CAATCTTTCG TATTTCTCAT CAAAAAAGCC GTTACATATA TTATCTTTAC 
    TATCGAAGAA AGGAGATATC AAAAGAGCTG TATGAATTTT GTTTGGACCA 
    AGGTCATGCT GATAAAAATC TGATCGCGAA GTGGAAAAAG CCAGGTTATG 
    AGCGTCTTTG CTGCCTCCGA TGCATACAGA CACGAGACCA CAACTTTGCA 
    ACCACTTGTG TCTGTAGGGT CCCCAAGCAC CTCAGGGAAG AAAAGGTTAT 
    AGAGTGTGTC CATTGTGGGT GCAGAGGGTG TGCCAGTGGT GATTGAAGTC 
    GCTGTCCTGT GGCTACAAAT AATCTGAGAG TAATCGCTCG AGATGTTTCC 
    TTGTGTTTGA TCTCTGTTAA GACAAGCACC ATATGACCAT ATAATCAGGC 
    GATTCGTGTG GTGTACTGTA AACTCTTGGG CTATGGCATG TGTCTGGTGA 
    GTAATGACGA TTTCTCAACA TGTTGTGTTC GCAAATGGTT CAGTAGAAAC 
    TAGCTGGAAG TTTGATGGAT TACTGTACCC CGCTAGACCT ACTTACTACA 
    ATACTACTGT ATGAACACTT CCTTGCTACA GAGGTATTAG GATGATGTTG 
    AGTTATCAGG TTTTCT

    Gene models with high sequence identity

    1. AT4G21110.1 [+] show detail - G10 family protein
      E-value: 6e-77; Score: 284.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam G10 protein 3.8e-61
    HMMPanther G10 protein 3.4e-91
    FPrintScan G10 protein 5.7e-58
    FPrintScan G10 protein 5.7e-58
    FPrintScan G10 protein 5.7e-58
    FPrintScan G10 protein 5.7e-58
    FPrintScan G10 protein 5.7e-58
    PatternScan BUD31/G10-related, conserved site 0
    PatternScan BUD31/G10-related, conserved site 0

    See the detailed result >

    AT4G21110.1

    Model type
    Protein coding
    Short Description
    G10 family protein
    Computational Description
    G10 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: G10 protein (InterPro:IPR001748), BUD31/G10-related, conserved site (InterPro:IPR018230); Has 466 Blast hits to 466 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 126; Plants - 80; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR