K35112

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35112

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35112

Determination of introduced cDNA(s)

  • J023026K20 - Rice Full-length cDNAs - Original: J023026K20

    full reading [+] show sequence

    Nucleotide sequence: J023026K20 - full reading
    GATTTCGAAG CCCACCGAAT TCCATTCCTC GCGATTCCTC TCCCCTCGCC 
    TCCTCGTCCT CCCCCTCCTA GGGGATCGCC GGAGAGGAAT CGCGCGGAGG
    AAAAAAAAAG AAAAGGGCTT CCTCGTCGTC TAAGTTAAAA GGAAGCCATG
    GAGCACAAGG AGACTGGATG CCAGCAGCCA GAAGGCCCGA TCCTTTGCAT
    CAATAACTGC GGCTTCTTTG GCAGTGCGGC TACCATGAAC ATGTGCTCAA
    AGTGCCACAA GGAGATGATA ATGAAGCAGG AGCAGGCCAA GCTGGCAGCC
    TCCTCTATCG ACAGCATTGT CAATGGTGGT GATTCCGGGA AGGAACCAAT
    TATTGCTGGT CACGCTGAAG TAGCTGTTGC TCAAGTCGAG GTGAAGACGC
    TTGTTGCGCA GCCTGCTGAG ATTGCTGGCC CTAGTGAGGG GGTCACGGTG
    AACCCCAAGG GGAGGGAAGG ACCAAATCGG TGCTCCACTT GTCGGAAGAG
    GGTTGGTCTT ACCGGATTCA ACTGCCGATG TGGCAACTTG TACTGCGCAA
    TGCACCGCTA TTCCGATAAG CATGACTGCC AGTTTGACTA TCGGACCGCT
    GCTAGGGATG CTATTGCCAA GGCTAATCCG GTGGTGAAGG CGGAGAAACT
    TGACAAAATT TAGGGGTTTC ATATGGTTGG TGAACGAAGC GTCACAATCT
    GCGGTCTTCA TCATCCATCT TTGCTGCATT ATCCATGCCT TTTCCTTTCA
    TGTTGGCTGC TACAATCTAG TTGTTCGGCA TTTGTGATGC ATGGCACACC
    ACGGCAGCTT CAAGAACCCT CATCTCTGGT CAGTCCGAAT GGTTTGCATG
    TTGGCTATGT TGTGTAAGCT TTATTTATGA TCGTCTTGCG CTGACGGTAT
    TGTGGCTTCG CATTTAGCTA GCTCTGTAAT GTACTATTGT ATCCGAAGTG
    TTACATTGCA ACCAGTAATA GTAATCAGCA ATCGTCCGTT ATATGGTACT
    GATGACCATT CCTGTGTGCA GTACATCTCA ATCTTCTACA TGGTAAACTC
    TGGGTGAGGA TTCACAATAT ATATACTACC TGGATATCTC CCACAAAGAC
    TTGTTTAGAA GTTTAGGTGA CCTGGTGAGA ATGTGGTTCT GTGGTTGGTT
    TGTGTAGGCT TTGGCTTTAC CTGGATATTA TACACTGGAA TATATACTTT
    TGCATGTGG

    Gene models with high sequence identity

    1. AT1G51200.4 [+] show detail - A20/AN1-like zinc finger family protein
      E-value: 5e-52; Score: 202.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PVPR3 PROTEIN 6.8e-92
    HMMPanther PRK1-ASSOCIATED ZINC FINGER PROTEIN 6.8e-92
    HMMSmart Zinc finger, A20-type 0.000000025
    HMMSmart Zinc finger, AN1-type 5.7e-17
    HMMPfam Zinc finger, A20-type 0.0000000000027
    HMMPfam Zinc finger, AN1-type 0.0000000000041
    Gene3D Zinc finger, AN1-type 1.1e-25
    ProfileScan Zinc finger, A20-type 9.832
    ProfileScan Zinc finger, AN1-type 12.281

    See the detailed result >

    AT1G51200.4

    Model type
    Protein coding
    Short Description
    A20/AN1-like zinc finger family protein
    Computational Description
    A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1).
    Link
    InterPro Scan - TAIR