K35112

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35112

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35112

Determination of introduced cDNA(s)

  • J023026K20 - Rice Full-length cDNAs - Original: J023026K20

    full reading [+] show sequence

    Nucleotide sequence: J023026K20 - full reading 
    GATTTCGAAG CCCACCGAAT TCCATTCCTC GCGATTCCTC TCCCCTCGCC 
    TCCTCGTCCT CCCCCTCCTA GGGGATCGCC GGAGAGGAAT CGCGCGGAGG 
    AAAAAAAAAG AAAAGGGCTT CCTCGTCGTC TAAGTTAAAA GGAAGCCATG 
    GAGCACAAGG AGACTGGATG CCAGCAGCCA GAAGGCCCGA TCCTTTGCAT 
    CAATAACTGC GGCTTCTTTG GCAGTGCGGC TACCATGAAC ATGTGCTCAA 
    AGTGCCACAA GGAGATGATA ATGAAGCAGG AGCAGGCCAA GCTGGCAGCC 
    TCCTCTATCG ACAGCATTGT CAATGGTGGT GATTCCGGGA AGGAACCAAT 
    TATTGCTGGT CACGCTGAAG TAGCTGTTGC TCAAGTCGAG GTGAAGACGC 
    TTGTTGCGCA GCCTGCTGAG ATTGCTGGCC CTAGTGAGGG GGTCACGGTG 
    AACCCCAAGG GGAGGGAAGG ACCAAATCGG TGCTCCACTT GTCGGAAGAG 
    GGTTGGTCTT ACCGGATTCA ACTGCCGATG TGGCAACTTG TACTGCGCAA 
    TGCACCGCTA TTCCGATAAG CATGACTGCC AGTTTGACTA TCGGACCGCT 
    GCTAGGGATG CTATTGCCAA GGCTAATCCG GTGGTGAAGG CGGAGAAACT 
    TGACAAAATT TAGGGGTTTC ATATGGTTGG TGAACGAAGC GTCACAATCT 
    GCGGTCTTCA TCATCCATCT TTGCTGCATT ATCCATGCCT TTTCCTTTCA 
    TGTTGGCTGC TACAATCTAG TTGTTCGGCA TTTGTGATGC ATGGCACACC 
    ACGGCAGCTT CAAGAACCCT CATCTCTGGT CAGTCCGAAT GGTTTGCATG 
    TTGGCTATGT TGTGTAAGCT TTATTTATGA TCGTCTTGCG CTGACGGTAT 
    TGTGGCTTCG CATTTAGCTA GCTCTGTAAT GTACTATTGT ATCCGAAGTG 
    TTACATTGCA ACCAGTAATA GTAATCAGCA ATCGTCCGTT ATATGGTACT 
    GATGACCATT CCTGTGTGCA GTACATCTCA ATCTTCTACA TGGTAAACTC 
    TGGGTGAGGA TTCACAATAT ATATACTACC TGGATATCTC CCACAAAGAC 
    TTGTTTAGAA GTTTAGGTGA CCTGGTGAGA ATGTGGTTCT GTGGTTGGTT 
    TGTGTAGGCT TTGGCTTTAC CTGGATATTA TACACTGGAA TATATACTTT 
    TGCATGTGG

    Gene models with high sequence identity

    1. AT1G51200.4 [+] show detail - A20/AN1-like zinc finger family protein
      E-value: 5e-52; Score: 202.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PVPR3 PROTEIN 6.8e-92
    HMMPanther PRK1-ASSOCIATED ZINC FINGER PROTEIN 6.8e-92
    HMMSmart Zinc finger, A20-type 2.5e-08
    HMMSmart Zinc finger, AN1-type 5.7e-17
    HMMPfam Zinc finger, A20-type 2.7e-12
    HMMPfam Zinc finger, AN1-type 4.1e-12
    Gene3D Zinc finger, AN1-type 1.1e-25
    ProfileScan Zinc finger, A20-type 9.832
    ProfileScan Zinc finger, AN1-type 12.281

    See the detailed result >

    AT1G51200.4

    Model type
    Protein coding
    Short Description
    A20/AN1-like zinc finger family protein
    Computational Description
    A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1).
    Link
    InterPro Scan - TAIR