K35119

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	whole plant flowering stage (PO:0007016)	late (PATO:0000693) (Adult plant::Flowering::late)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	root (PO:0009005)	present in greater numbers in organism (PATO:0000470) (Root::Number::many)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35119

Determination of introduced cDNA(s)

J013045L08 - Rice Full-length cDNAs - Original: J013045L08

full reading [+] show sequence

GTGGGCGCAC CACCATACAC AGCCCGAGGC CGCGCAGCTC TCGACCCCGA 
CGCGGCTCGG CAGTCGGCAT CGCCAACCCT CATCTCCCCC CCTCCTCTCC 
ACCGACCTCG ATCTCGCCCC TCCCCCCACG CGCGCGATCT CGCCCAGATC 
TCGCTGAGCC GCCGCCGCCG CCGCAGCAGC AGCGGCCATG GAGAACCTGA 
TCTCGCTCGT CAACAAGCTG CAGCGGGCCT GCACCGCCCT CGGCGACCAC 
GGCGAGGAGA GCGCCCTCCC CACCCTCTGG GACTCGCTGC CGGCCATCGC 
CGTCGTCGGA GGCCAGAGTT CGGGTAAATC CTCGGTGCTG GAGAGCGTTG 
TTGGGAAGGA TTTCCTACCA AGAGGCTCAG GCATTGTCAC CCGTCGTCCC 
TTGGTGCTGC AGCTTCATAG GATCGACGGA GACAGAGAAT ATGCAGAGTT 
CATGCACCTT CCCAGGAAGA GATTCACTGA TTTCGCTCTT GTGAGGAAGG 
AGATAGCTGA TGAAACTGAC AGAGAAACTG GTCGTTCAAA GCAAATATCA 
TCGGTCCCTA TTCATTTAAG CATATATTCT CCAAATGTTG TGAACCTGAC 
TCTTATCGAT CTTCCTGGGC TTACTAAAGT TGCTGTTGAG GGTCAGCCTG 
ACAGTATTGT TCAGGACATT GAAAACATGG TTCGCTCGTT CATAGAAAAG 
CCCAATTGTA TCATTCTGGC TGTTTCTCCA GCCAATCAGG ATCTTGCAAC 
TTCTGATGCA ATTAAGATTT CACGGGAAGT TGACCCCAAA GGTGAAAGGA 
CGTTTGGTGT GCTTACAAAA ATTGATCTAA TGGACAAGGG CACCGATGCT 
GTTGATATAT TGGAAGGCAG ATCATACCGG CTCCAACAAC AATGGATTGG 
TGTCGTCAAT CGATCTCAGC AGGATATCAA CAAGAATGTG GACATGATTG 
CTGCTAGGCG CAGAGAGCGT GAATATTTTT CAACTACGCC AGAATACAAG 
CACCTTGCTC ATAGGATGGG ATCAGAACAT TTAGCAAAGA GTCTCTCGAA 
GCATTTGGAG ACTGTTATTA AGTCAAGAAT CCCAGGGCTC CAATCTCTCA 
TTACAAAGAC AATTGCCGAA CTGGAGACAG AACTTAATCG ACTTGGGAAG 
CCCATTGCTA CAGATGCTGG AGGAAAGCTG TACACGATCA TGGAAATATG 
CCGCATGTTT GATGGTATCT ACAAAGAACA TCTGGATGGA GTGCGTCCTG 
GTGGTGAGAA AATCTATCAT GTCTTTGACA ATCAGTTTCC TGTAGCCATT 
AAACGGTTGC AGTTTGACAA ACAACTGGCA ATGGAAAATG TGAAAAAGCT 
CATAACGGAG GCTGATGGAT ACCAACCTCA TTTAATAGCT CCAGAGCAAG 
GATATCGACG GCTCATAGAG TCTTGTCTTG TTAGTATCAG AGGTCCTGCT 
GAGGCAGCTG TGGATGCGGT CCATGCGATA CTCAAGGAAT TAGTGCACAA 
GGCCATCAAT GAAACACATG AGCTGAAGCA GTTCCCCACT CTTCGTGTGG 
AAGTAGGCAA TGCGGCTTTT GAGTCATTGG ACAGAATGAG GGATGAAAGC 
AAGAAAAACA CATTAAAGCT TGTTGATATG GAATGCAGCT ACTTAACCGT 
AGATTTCTTC AGGAAACTTC CCCAGGATGT TGAGAAGGGT GGAAATCCAA 
GCCACTCTAT TTTTGATAGA TAATGATTCT TATCTTAGAC GAATTGGAAC 
AACGGTTCTG GCATATATTA ACATGGTATG TTCAACCTTG AGGAACTCTA 
TTCCGAAATC TATTGTCTAC TGTCAAGTGC GGGAGGCAAA GCGCTCACTG 
CTCGATCACT TCTTTACTGA ATTGGGAGCA AGAGAGATTA AACAACTTTC 
TAAGCTTCTT GATGAAGACC CCGCCGTCAT GGAACGGAGG ACTAATCTTG 
CGAAGAGGCT GGAGCTATAT CGGAGTGCTC AAGCAGAAAT TGATGCGGTT 
GCATGGTCCA AATAGTCCTG ATCATCTACT TATCATACTC ATGTTTCTCC 
TTTACTCCCA GTTGGTGATC CTCCCCTATC TTGGGGCATA TATAGCTGAT 
TTTACCCGGT TCTAGGTCAT TCATAGATCA ACGCAGCTGT GAGGTGTCAT 
TTGGTTTGTG CTTTTGTTCC TTGTGCTTGA GGATCTAGGA GACACCAGGC 
TGCTGTACTT TTTGTATTAC GACCAAGTTC ATATATCGTG TTTAATTTTT 
GTCACAGCCC ATTCTTTCGT TCCGTTTACA TATATCGTCT TCAATTTGTT 
ACT

Gene models with high sequence identity

AT5G42080.1 [+] show detail - dynamin-like protein
E-value: 0; Score: 156.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	GTPase effector domain, GED	21.747
PatternScan	Dynamin, GTPase region, conserved site	0
Gene3D	no description	1.1e-103
superfamily	P-loop containing nucleoside triphosphate hyd	6.1e-46
FPrintScan	Dynamin, GTPase domain	1.5e-60
FPrintScan	Dynamin, GTPase domain	1.5e-60
FPrintScan	Dynamin, GTPase domain	1.5e-60
FPrintScan	Dynamin, GTPase domain	1.5e-60
FPrintScan	Dynamin, GTPase domain	1.5e-60
FPrintScan	Dynamin, GTPase domain	1.5e-60
HMMPfam	Dynamin central region	3.2e-70
HMMPfam	Dynamin, GTPase domain	7.2e-54
HMMPfam	Dynamin GTPase effector	1.4e-21
HMMSmart	Dynamin, GTPase domain	3e-119
HMMSmart	Dynamin GTPase effector	2.3e-34
HMMPanther	DYNAMIN	1.6e-14
HMMPanther	DYNAMIN	4.1e-253
HMMPanther	DYNAMIN	4.1e-253

See the detailed result >

AT5G42080.1

Model type: Protein coding
Short Description: dynamin-like protein
Curator Summary: Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching. Also controls vascular patterning in combination with VAN3 and GNOM. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.
Computational Description: dynamin-like protein (DL1); FUNCTIONS IN: protein binding, clathrin binding, GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1B (TAIR:AT3G61760.1); Has 2870 Blast hits to 2761 proteins in 321 species: Archae - 2; Bacteria - 66; Metazoa - 1056; Fungi - 810; Plants - 578; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
Link: InterPro Scan - TAIR