K35119

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35119

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Adult plant::Flowering::late)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35119

Determination of introduced cDNA(s)

  • J013045L08 - Rice Full-length cDNAs - Original: J013045L08

    full reading [+] show sequence

    Nucleotide sequence: J013045L08 - full reading
    GTGGGCGCAC CACCATACAC AGCCCGAGGC CGCGCAGCTC TCGACCCCGA 
    CGCGGCTCGG CAGTCGGCAT CGCCAACCCT CATCTCCCCC CCTCCTCTCC
    ACCGACCTCG ATCTCGCCCC TCCCCCCACG CGCGCGATCT CGCCCAGATC
    TCGCTGAGCC GCCGCCGCCG CCGCAGCAGC AGCGGCCATG GAGAACCTGA
    TCTCGCTCGT CAACAAGCTG CAGCGGGCCT GCACCGCCCT CGGCGACCAC
    GGCGAGGAGA GCGCCCTCCC CACCCTCTGG GACTCGCTGC CGGCCATCGC
    CGTCGTCGGA GGCCAGAGTT CGGGTAAATC CTCGGTGCTG GAGAGCGTTG
    TTGGGAAGGA TTTCCTACCA AGAGGCTCAG GCATTGTCAC CCGTCGTCCC
    TTGGTGCTGC AGCTTCATAG GATCGACGGA GACAGAGAAT ATGCAGAGTT
    CATGCACCTT CCCAGGAAGA GATTCACTGA TTTCGCTCTT GTGAGGAAGG
    AGATAGCTGA TGAAACTGAC AGAGAAACTG GTCGTTCAAA GCAAATATCA
    TCGGTCCCTA TTCATTTAAG CATATATTCT CCAAATGTTG TGAACCTGAC
    TCTTATCGAT CTTCCTGGGC TTACTAAAGT TGCTGTTGAG GGTCAGCCTG
    ACAGTATTGT TCAGGACATT GAAAACATGG TTCGCTCGTT CATAGAAAAG
    CCCAATTGTA TCATTCTGGC TGTTTCTCCA GCCAATCAGG ATCTTGCAAC
    TTCTGATGCA ATTAAGATTT CACGGGAAGT TGACCCCAAA GGTGAAAGGA
    CGTTTGGTGT GCTTACAAAA ATTGATCTAA TGGACAAGGG CACCGATGCT
    GTTGATATAT TGGAAGGCAG ATCATACCGG CTCCAACAAC AATGGATTGG
    TGTCGTCAAT CGATCTCAGC AGGATATCAA CAAGAATGTG GACATGATTG
    CTGCTAGGCG CAGAGAGCGT GAATATTTTT CAACTACGCC AGAATACAAG
    CACCTTGCTC ATAGGATGGG ATCAGAACAT TTAGCAAAGA GTCTCTCGAA
    GCATTTGGAG ACTGTTATTA AGTCAAGAAT CCCAGGGCTC CAATCTCTCA
    TTACAAAGAC AATTGCCGAA CTGGAGACAG AACTTAATCG ACTTGGGAAG
    CCCATTGCTA CAGATGCTGG AGGAAAGCTG TACACGATCA TGGAAATATG
    CCGCATGTTT GATGGTATCT ACAAAGAACA TCTGGATGGA GTGCGTCCTG
    GTGGTGAGAA AATCTATCAT GTCTTTGACA ATCAGTTTCC TGTAGCCATT
    AAACGGTTGC AGTTTGACAA ACAACTGGCA ATGGAAAATG TGAAAAAGCT
    CATAACGGAG GCTGATGGAT ACCAACCTCA TTTAATAGCT CCAGAGCAAG
    GATATCGACG GCTCATAGAG TCTTGTCTTG TTAGTATCAG AGGTCCTGCT
    GAGGCAGCTG TGGATGCGGT CCATGCGATA CTCAAGGAAT TAGTGCACAA
    GGCCATCAAT GAAACACATG AGCTGAAGCA GTTCCCCACT CTTCGTGTGG
    AAGTAGGCAA TGCGGCTTTT GAGTCATTGG ACAGAATGAG GGATGAAAGC
    AAGAAAAACA CATTAAAGCT TGTTGATATG GAATGCAGCT ACTTAACCGT
    AGATTTCTTC AGGAAACTTC CCCAGGATGT TGAGAAGGGT GGAAATCCAA
    GCCACTCTAT TTTTGATAGA TAATGATTCT TATCTTAGAC GAATTGGAAC
    AACGGTTCTG GCATATATTA ACATGGTATG TTCAACCTTG AGGAACTCTA
    TTCCGAAATC TATTGTCTAC TGTCAAGTGC GGGAGGCAAA GCGCTCACTG
    CTCGATCACT TCTTTACTGA ATTGGGAGCA AGAGAGATTA AACAACTTTC
    TAAGCTTCTT GATGAAGACC CCGCCGTCAT GGAACGGAGG ACTAATCTTG
    CGAAGAGGCT GGAGCTATAT CGGAGTGCTC AAGCAGAAAT TGATGCGGTT
    GCATGGTCCA AATAGTCCTG ATCATCTACT TATCATACTC ATGTTTCTCC
    TTTACTCCCA GTTGGTGATC CTCCCCTATC TTGGGGCATA TATAGCTGAT
    TTTACCCGGT TCTAGGTCAT TCATAGATCA ACGCAGCTGT GAGGTGTCAT
    TTGGTTTGTG CTTTTGTTCC TTGTGCTTGA GGATCTAGGA GACACCAGGC
    TGCTGTACTT TTTGTATTAC GACCAAGTTC ATATATCGTG TTTAATTTTT
    GTCACAGCCC ATTCTTTCGT TCCGTTTACA TATATCGTCT TCAATTTGTT
    ACT

    Gene models with high sequence identity

    1. AT5G42080.1 [+] show detail - dynamin-like protein
      E-value: 0; Score: 156.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan GTPase effector domain, GED 21.747
    PatternScan Dynamin, GTPase region, conserved site 0
    Gene3D no description 1.1e-103
    superfamily P-loop containing nucleoside triphosphate hyd 6.1e-46
    FPrintScan Dynamin, GTPase domain 1.5e-60
    FPrintScan Dynamin, GTPase domain 1.5e-60
    FPrintScan Dynamin, GTPase domain 1.5e-60
    FPrintScan Dynamin, GTPase domain 1.5e-60
    FPrintScan Dynamin, GTPase domain 1.5e-60
    FPrintScan Dynamin, GTPase domain 1.5e-60
    HMMPfam Dynamin central region 3.2e-70
    HMMPfam Dynamin, GTPase domain 7.2e-54
    HMMPfam Dynamin GTPase effector 1.4e-21
    HMMSmart Dynamin, GTPase domain 3e-119
    HMMSmart Dynamin GTPase effector 2.3e-34
    HMMPanther DYNAMIN 0.000000000000016
    HMMPanther DYNAMIN 4.1e-253
    HMMPanther DYNAMIN 4.1e-253

    See the detailed result >

    AT5G42080.1

    Model type
    Protein coding
    Short Description
    dynamin-like protein
    Curator Summary
    Encodes a dynamin-like protein related to phragmoplastin. Mutations in this gene, in combination with mutation in ADL1E, result in defects in embryogenesis, cell plate formation and trichome branching. Also controls vascular patterning in combination with VAN3 and GNOM. DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.
    Computational Description
    dynamin-like protein (DL1); FUNCTIONS IN: protein binding, clathrin binding, GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1B (TAIR:AT3G61760.1); Has 2870 Blast hits to 2761 proteins in 321 species: Archae - 2; Bacteria - 66; Metazoa - 1056; Fungi - 810; Plants - 578; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR