K35132

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35132

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35132

Determination of introduced cDNA(s)

  • J023020B07 - Rice Full-length cDNAs - Original: J023020B07

    full reading [+] show sequence

    Nucleotide sequence: J023020B07 - full reading 
    GAAACCATCC AACCTCACAC AGTTCACACA ACCACAAGCT TCAAAGCTCC 
    CTACTACTTC TCCTCCTCCT TCTTCTCCGG CGCCGGCGAC GATGACGCTG 
    ACGATCCCGG ACGACGTGCG GGCGAAGGCG GAGGTGTACG TCGGCGACGA 
    GGCCGGGCAG GAGAAGACGC GGCTGCTGCT GGAGGAGACG GGGCTCCCCA 
    GCGGCCTCCT CCCTCTCCGC GACATCATCG AGTGCGGCTA CGTGGAGGAG 
    ACCGGGTTCG TGTGGCTGAA GCAGCGGCGG AAGGTGGACC ACTTCTTCGC 
    CAAGGCCGGC CGCCACGTCA GCTACGCCGC CGAGGTCTCC GCCGTCGCCG 
    AGAAGGGCCG CCTCCGCAAG ATCACCGGCG TCAAGGCCAA GGAGCTCCTC 
    ATCTGGGTCA CCCTCCACGA GATCGCCGTC GACGACCCCC CCACCGGCAA 
    GCTCACCTGC AAGGCCATCG GCGGCCTCTC CCGCAGCTTC CCCGTCGACG 
    CCTTCGAGGC CCCCCCGCCG CCGCCCAAGA ACCCCTCCCC CGCCGCCGGC 
    GACACCACCA AGGTCGATGA GGAGAAGAAG AAGGAGGAGG AGGTCGCCGG 
    CGACGCCGCC GCCGCCGCCA TTGACGAGAT CGAGGGGAAG ATGAAGGAGA 
    TGAACAGCAA GGAGGTGCAG GTGCAGGCCG AGGGAGTGGC AGCCAAGAAC 
    TGAAGAAGAT CGATCGATCG ATATACACAG ATCATCATAC ATCTCATCAT 
    CATCATCAGC AGCAGAAGCA GCAGCACGAG ATCTCACTAT CATATGGAGA 
    TTCAGATGAG CTAGTAGCTG AGATGATGAG TTATTATTAA TTAATCGTTT 
    TATTTGGTTC TGAATAATCT GCATCTGCAT GCATGCACTG CTTTAAATTA 
    ATTATTATTA AGTTGTTACT ACTTCTTTTC TTGCTGCTGT TAAACAGAGA 
    GAAAATGATA TATATATATG GAGAGATCGA CGACATGTAT TATTATTGCT 
    ATCATCATCT GATGAGATTA TAATATGAGC AATGGAAATA TTATTT

    Gene models with high sequence identity

    1. AT1G56580.1 [+] show detail - Protein of unknown function, DUF538
      E-value: 5e-29; Score: 125.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Protein of unknown function DUF538 8.1e-18
    HMMPfam Protein of unknown function DUF538 9.6e-26
    FPrintScan PRICHEXTENSN 4.2e-10
    FPrintScan PRICHEXTENSN 4.2e-10
    FPrintScan PRICHEXTENSN 4.2e-10
    FPrintScan PRICHEXTENSN 4.2e-10
    Coil coiled-coil 0

    See the detailed result >

    AT1G56580.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF538
    Curator Summary
    Encodes SMALLER WITH VARIABLE BRANCHES (SVB), a protein with a conserved domain of unknown function (DUF538). The trichomes of the SVB mutants are smaller and exhibit branches of variable length and number.
    Computational Description
    SMALLER WITH VARIABLE BRANCHES (SVB); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G09310.1); Has 365 Blast hits to 365 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 365; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR