K35144

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) dark green (PATO:0001249) (Rosette leaf::Color::dark) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	whole plant flowering stage (PO:0007016)	late (PATO:0000693) (Adult plant::Flowering::late)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35144

Determination of introduced cDNA(s)

J033060N07 - Rice Full-length cDNAs - Original: J033060N07

full reading [+] show sequence

GACATGCACT TGCAGTCAGT GGTACAACAC CACAGCAACG CACCACCGGC 
CATCAACCTC CTCTTCCCTG CTTCTCGCTC GCTCTCCTGC CCTGTTTCTT 
GGAGAAGTGA GCTTAAGTGA GAGCCTCTGT CCCTCGCACA CGCTATTGGC 
CATGGTGGTT CTCGCTGGCC CGCCCGCCGT CGATCACATC CCGCTGCTGA 
GGTCGCCGGA CCCCGGCGAC GTCTTCTCCG GCGTGCCGGT CGTCGACCTC 
GGCAGCCCCG GCGCGGCGAG GGCCGTGGTG GACGCCTGCG AGCGGTACGG 
GTTCTTCAAG GTCGTCAACC ACGGCGTGGC CACGGACACG ATGGACAAGG 
CCGAGTCGGA GGCCGTCAGG TTCTTCTCCC AGACGCAGCC CGACAAGGAC 
CGCTCCGGCC CGGCCTACCC GTTCGGGTAC GGCAGCAAGC GGATCGGGTT 
CAATGGCGAC ATGGGGTGGC TCGAGTACCT CCTCCTCGCC CTCGACGACG 
CGTCGCTCGC CGACGCCTGC ACCGTCCCGT CCTGCGCGGT CTTCCGGGCC 
GCTCTGAACG AGTACATCTC GGGGGTGCGG AAGGTGGCGG TGCGGGTGAT 
GGAGGCGATG TCGGAGGGGC TGGGCATTGC GCAGGCGGAC GCGCTGAGCG 
CGCTGGTGAC GGCGGAAGGG AGCGACCAGG TGTTCCGCGT GAACCACTAC 
CCGCCGTGCC GCGCGCTGCA GGGGCTCGGC TGCAGCGTCA CCGGCTTCGG 
CGAGCACACC GACCCGCAGC TCGTCTCCGT GCTCCGCTCA AACGGCACGT 
CCGGCCTGCA GATCGCGCTC CGCGACGGCC AGTGGGTGTC CGTGCCCTCC 
GACCGCGACT CCTTCTTCGT CAACGTCGGC GACTCGTTGC AGGTTCTGAC 
CAATGGGAGG TTCAAGAGCG TGAAGCACAG GGTGGTGGCC AACAGCCTAA 
AGTCTAGGGT TTCCTTCATC TACTTTGGAG GGCCACCGTT AGCACAGAGG 
ATTGCACCAT TGCCACAGCT GCTGGGGGAG GGAGAGCAGA GCCTGTACAA 
GGAGTTCACA TGGGATGAGT ACAAGAAGGC TGCCTACAAA TCAAGGCTTG 
GAGACAACAG GCTGGCCCAG TTTGAGAAGA AGTAGCTAGC TAGATGCCTA 
GCAACAGAAC TGGCCGGTCA AGCAACAACG ACTTTACTGC ATGGCAGCTA 
GCTACCTTAG CTATGTCTCA CGCACACGTA CGGTACACCA TGACCACGAG 
AAGATGAAGC TGCTTAAGAG AGAAAAAGAA AAGAAAATAA AAACAGGAAG 
AAGATAATAA CTTCAAGATG CACAATGTAC AGCCAGGTTG GATGGATAGC 
TAGATTTTTC TCGTGTGGCT AATCACCGTG TGTGGTGAGG TGGGCTCCTT 
TCCTGTTTCG GAATACTGAT CGATGGATGA ACAGCCTCCA ATAGTTAATG 
TTAACCAAAT ATAGCACAAC AAAGGGGTTC TTTTCTTCCT TTGGTTGTTT 
CTTTTTTCCT CTTGCCTTTG ATTTTCTCGT CATGCTTTCT GAGCATTAAT 
TATGTGTGCG TGTATTTCGG TATACGTAAC GTACTTTTAC CTATGTGTGT 
ATAGTACGTG GCTTGTGTTA ACAAGTAAAT ATTATAGTCT CTCTCTTTCG 
TTATGCAACT GACTTCTGCG CGGTCCAAAT GCATTGATGG AGATATATCT 
ATTGGTGTAC AATGTCACCT TCAAGATTAA TGAATTTTCA TCACTCAGG

Gene models with high sequence identity

AT1G30040.1 [+] show detail - gibberellin 2-oxidase
E-value: 6e-91; Score: 332.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	GIBBERELLIN 2-BETA-DIOXYGENASE 2	1e-132
HMMPanther	IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL	1e-132
Gene3D	no description	5.7e-78
superfamily	Clavaminate synthase-like	5.4e-83
HMMPfam	Oxoglutarate/iron-dependent oxygenase	3.2e-23

See the detailed result >

AT1G30040.1

Model type: Protein coding
Short Description: gibberellin 2-oxidase
Curator Summary: Encodes a gibberellin 2-oxidase that acts on C-19 gibberellins. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.
Computational Description: gibberellin 2-oxidase (GA2OX2); CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 2-oxidase 3 (TAIR:AT2G34555.1); Has 8540 Blast hits to 8490 proteins in 994 species: Archae - 0; Bacteria - 1137; Metazoa - 84; Fungi - 1033; Plants - 4909; Viruses - 0; Other Eukaryotes - 1377 (source: NCBI BLink).
Link: InterPro Scan - TAIR