K35147

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35147

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35147

Determination of introduced cDNA(s)

  • J023114F03 - Rice Full-length cDNAs - Original: J023114F03

    full reading [+] show sequence

    Nucleotide sequence: J023114F03 - full reading 
    GAGGAAGGAA AGAAGCCTAA GCCCATCGGA AATCTCTCCT CCTCCCAGCA 
    AAGAGGAGGT GGTGGAGATC TCCCAATCCG CGGGAATCAC TCGCTGTTCA 
    CCCCGATTCG GCCTCCGCTC GAGCTCTGAA TCTCGGGAGC TCCTGATCTG 
    GAGGATGCCA AATGTATGAA CCAAAGCCCT TCTCAAGCAT TGTACTAGCT 
    CACAACGATC CAGTTTCCCA CAATCAACAA ATTGAACGTA TTAACAACAA 
    TGTAGTATCT AATAGTGGTG GGAACAGCTC AAACAGCAAC TTTGCCGCCA 
    GACAGCGCTT ACGGTGGACT GATGACCTCC ATGATCGTTT TGTGGATGCT 
    GTAACACAGC TTGGTGGACC CGACAGGGCA ACTCCGAAGG GAATTCTTAG 
    AATAATGGGT GTTCAAGGGT TGACCATCTA TCATGTCAAA AGCCATCTGC 
    AAAAATATCG GCTTGCTAAA TACATTCCAG ATCCCACAGC TGATGGTGCC 
    AAGTCTGACA AGAAAGATCT CGGAGATTTG CTTGCTGACA TTGAAAGCTC 
    CTCGGGAATG GAAATAGGGG AGGCTTTAAA GTTGCAGATG GAGGTGCAAA 
    AGCGGCTACA TGAACAATTA GAGGTGCAAA GGCAGCTACA GCTCCGGATA 
    GAAGCCCAAG GAAGGTACCT CCAGAAGATC ATTGAGGAGC AGCAGCGGCT 
    CAGTGGTGTG CTGGGTGAAT CAGGCAAGTT AGGCGCCCTG GGACCAGCTC 
    CAGGGGAGCC ATACCAGGAT TCCAACAAAA CCGACCCCTC GACCCCGGTA 
    CCGACTTCCG AATCCCCAAT CCGCGACAAG GCTGGAAGCG GCTTGTTCAA 
    GACCATTTCT TCGCACGACG ACTGCCGCGA GCCTTTGACA CCGGACTCCA 
    GCTGCCGTGC CGGCTCCCCT TTGGAGAGCC CCCCCAGGGC TAGCAAGAGG 
    ATCCGGGTCA GCAGCGACAT TGATCATCGT GGGAACAATG AGTTCCCCCC 
    TCCTCTCAAA GTTCCGGAGC CAAGTTCAGG TTCAGATTTC CGACAGGAAA 
    GCTCAGTGTT ATTATCATCC AGCGCAGTGC ACTTCGATTC TTTGGAGAGC 
    CTGGATGCAG ATGAAAATGT CTTCACCAAT GGTTCAGGCA GTGATGATTG 
    ATTTTTCATC TGTGTAGGGG CAGGGCAGTG ATGTTTAGAG GACTTGCTAG 
    TTATCTCTTC AGTAGAGCTG TTGATCTTAG TGAGGCTGTA ATGCTGTAAA 
    CCCAGCCATG ACTGTTAGTT GTTATCTACT GTTCAGTGCA TGTTTGTAGC 
    TTATACTTAT TCAATCAGAG ATGTGCAGTG TGCACATCAC TTTACAGTTC 
    ATGTAGGTCT GGAAATGTAG TAAGGTGAGA AGAACATAAA GATATGATCT 
    TATTTTCGTT GAGCATGCAA CTG

    Gene models with high sequence identity

    1. AT2G01060.1 [+] show detail - myb-like HTH transcriptional regulator family protein
      E-value: 4e-66; Score: 249.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Homeodomain-related 3.8e-20
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 2e-33
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 12.367
    HMMPfam Myb, DNA-binding 2e-17
    superfamily Homeodomain-like 3.6e-17

    See the detailed result >

    AT2G01060.1

    Model type
    Protein coding
    Short Description
    myb-like HTH transcriptional regulator family protein
    Computational Description
    myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR