K35217

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35217

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35217

Determination of introduced cDNA(s)

  • J013043C13 - Rice Full-length cDNAs - Original: J013043C13

    full reading [+] show sequence

    Nucleotide sequence: J013043C13 - full reading 
    GTTTAGTTTG CTCCAAGCGC AAGCGCAAGC GGCGGAGAGG AAGCCATAGC 
    CACCTCCCAC CACGCCTTGG CCTTTCCATT ACCTACGCCT TCCCTTCCCT 
    TCCCTTCCCT TCGCGCGCTA CTTGGAATTG GATTAGCCAT AGCCATGGAC 
    GCCACGCTGC TCCGCTCCGC CGATGCCGCC GTCGCCGTCC GCTCCACCAC 
    CACTGCGCCT CCGCCTCGCC CTCGCCTCCA CCGCCCCAGT ACCCTCCCCC 
    TCCCGTCCTC CTGCGCCTGC GGGCCCCTCC GCGCCTACGC CGCTCCCGCT 
    GCCCCCGCGC CCGCCGCGCA CAACAACGGA GTCTACACAG TTGGTGACTT 
    CATGACCAAA AGGCCTAATC TCCATGTCGT TACACCTGCA ACCTCGGTTG 
    ATGAAGCTCT CGAGACGCTG GTGCAACACA AGATCTCTGG TTTCCCTGTT 
    GTTGATGACA CCGGAAAGTT GGTGGGTGTT GTCTCAGATT ATGATCTGTT 
    AGCACTTGAC TCAATATCAG GAAGTGGACT GACTGGCACA AACACAAGCA 
    TGTTTCCTGA GGTGGATAGT ACTTGGAAGA CATTTCGCGA GATACAGAGA 
    CTCTTGAGCA AAACCAATGG CAAAGTCATC GCTGATGTGA TGACTTATTC 
    GCCTCTTGCG GTTCGTGAAA GTACCAACCT TGATGCTGCT ACAAGGTTGC 
    TACTTGAAAC CAAATATCGC AGATTGCCTG TTGTTGATAG CACTGGTAAA 
    TTGGTTGGGA TGATCACAAG GGGGACTGTT GTCAGAGCTG CCCTCAAAAT 
    AAAGAAGACA GCTGAAGAAA CTGCTTAAAT TAGACAGTGT AGATGATTCT 
    TTATAAGTCA TTTCTGGGAC TGCAGTCACT TGGAAATTTA GTCCACTGAA 
    ACATTATTTG GTGAAATGAA CTACATCAGC CTTACAGATA CTGCGAATTC 
    GACAGTCAAT TCTTCTTGGA ACATAGATGG ATATAGGTAT TGTATTGTTG 
    CAGATATTTG GAATATAGCC GCAATCTGTT TGGGGCCACC AGATTTGGTC 
    GCCTCTCCTT ATTAGGTAGC ATAACATGGA GAATGTTATT ATTTTTATTT 
    TTACTTTTAT CATTGACTTG TATTCAAGAA CATCAGTGTA TTGAAATGTA 
    ACACTTCTGA TATGATGATA CCTTCCGC

    Gene models with high sequence identity

    1. AT4G36910.1 [+] show detail - Cystathionine beta-synthase (CBS) family protein
      E-value: 2e-61; Score: 233.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cystathionine beta-synthase, core 4e-17
    HMMPfam Cystathionine beta-synthase, core 8.4e-13
    superfamily CBS-domain 1.6e-13
    superfamily CBS-domain 4.8e-13
    ProfileScan Cystathionine beta-synthase, core 14.253
    ProfileScan Cystathionine beta-synthase, core 13.519
    HMMPanther INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED 1.4e-46
    HMMPanther INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED 1.4e-46
    HMMSmart Cystathionine beta-synthase, core 1.2e-08
    HMMSmart Cystathionine beta-synthase, core 3.4e-08

    See the detailed result >

    AT4G36910.1

    Model type
    Protein coding
    Short Description
    Cystathionine beta-synthase (CBS) family protein
    Curator Summary
    Has a cystathionine Beta-synthase domain.
    Computational Description
    LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2 (LEJ2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) family protein (TAIR:AT4G34120.1); Has 8411 Blast hits to 7757 proteins in 1885 species: Archae - 1245; Bacteria - 5956; Metazoa - 278; Fungi - 143; Plants - 147; Viruses - 0; Other Eukaryotes - 642 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR