K35323

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35323

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35323

Determination of introduced cDNA(s)

  • J013124H21 - Rice Full-length cDNAs - Original: J013124H21

    full reading [+] show sequence

    Nucleotide sequence: J013124H21 - full reading
    GCGGTTCTTC CCTCTTCCCA TTTCCGCGCG GCGCAACACC TTCTGGACGT 
    CGGCATGGCG GCGGTCGCCT CCGCCTCCCC GCTCCCCGCC GCGGCGGCGC
    CCTCCACCCG CTGCTCGCCG CCGCCCGCCT TCCTCCCTCT CCGTGCGCAC
    CGCCCCCGCG TCGGCACCGT CGCCACCAGG AGGGTTTTCC GCGCGGAGGC
    GATGAGGACG CAGCGGGAGA AGGAGCAGAC CGAGGTGGCC GTCGAGGAGT
    CCTTCCCCTT CAGGGAGACG GCTCCTCCTG ACGAGCCACT GGTCACCGCC
    GAGGAGAGCT GGGTGGTTAA GCTCGAGCAG TCCGTGAACA TTTTCCTCAC
    GGAGTCAGTC ATCACGATAC TTGATGGATT GTACCGTGAC CGCAACTACG
    CTAGATTTTT CGTATTGGAG ACGATTGCTA GGGTGCCGTA TTTTGCGTTT
    ATCTCGGTGC TTCACATGTA TGAAACCTTT GGCTGGTGGA GGAGAGCCGA
    TTATATAAAG GTGCACTTTG CTGAGAGCTG GAATGAGTTC CATCACCTCT
    TAATCATGGA AGAATTGGGT GGCAACTCTT TATGGGTTGA TCGTTTTCTT
    GCACGGTTTG CTGCATTTTT TTACTACTTC ATGACTGTTG CGATGTACAT
    GGTGAGCCCA AGAATGGCAT ACCATTTTTC TGAATGTGTT GAGAGGCATG
    CGTACTCAAC CTATGACAAG TTTATTAAGC TCCATGAAGA TGAGTTGAAA
    AAGCTACCAG CTCCCGAGGC GGCTTTAAAC TATTACCTGA ATGAGGATCT
    TTACTTATTC GATGAATTTC AAACAGCAAG AGTCCCATGT TCTAGGAGAC
    CTAAAATTGA TAACTTGTAT GATGTATTTG TCAATATACG AGATGATGAG
    GCAGAACATT GCAAGACGAT GAAGGCCTGT CAAACACATG GAAACCTTCG
    TTCTCCTCAC TCTATGCAGA AATGCTTAGA AACTGACACC GAGTGTGTAA
    TACCTGAAGA TGACTGTGAA GGTATCGTGG ATTGTGTCAA AAAATCTCTT
    GTGAGTAAAG AGTGACTGAT CCTAATTGGA ATGGAGTGCG TCATAGTCTC
    ATAGAATAGA GTTTTGATAA CAGTCGGTTT CCTTTTTTCT TTCAAAAGAT
    AGGGACCACT ATAATCTTAA CATTCTTGAT AATCCTTCAG AATAGGCTAG
    CTGTATCACA ATAAAAATAA TATATTCATG AGATAGATGT TACTGCAAGT
    TGTGAAGCCC TACAAAATTT GCAATCTTGA TGTGCTGTGG TTCTATGGAA
    AGTTCGGTTG CTTGCTGCTT CTTAAGTTCA CAAAGCTGCT CTGTAAGGGA
    AATGGAGATG GCTCATGATC AGGCAGCATA CGGTGAATAT GGTCAGCTCA
    AGGTGGAACT GACTCAAACC GTAGAATTTC GTGAAGATGA GAAGGAAGCT
    CACTGCAGTA TCGAAGAAGT CAATGCGAAA TGAAAAATCA ATCATACTGC
    TGCTTTGTTT TTTCTGAAGA TTTATTTGTC ATTTATTCAG TGTACAGATG
    ATACTATTAC ATCTCAGGCA AATTACTGT

    Gene models with high sequence identity

    1. AT4G22260.1 [+] show detail - Alternative oxidase family protein
      E-value: 4e-109; Score: 392.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G22260.1

    Model type
    Protein coding
    Short Description
    Alternative oxidase family protein
    Curator Summary
    Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues.
    Computational Description
    IMMUTANS (IM); CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: alternative oxidase 2 (TAIR:AT5G64210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR