K35339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35339

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35339

Determination of introduced cDNA(s)

  • J033063P17 - Rice Full-length cDNAs - Original: J033063P17

    full reading [+] show sequence

    Nucleotide sequence: J033063P17 - full reading
    GGAGAGAGGA AGAGGAGTCT CGGGTGGTGG CGCCATCGGC GGTGGGACCC 
    GGGAGCCGCT ACGGGAGGCG TAGACGACGA CCGGGGAGGA GAAGAAGAAG
    AAGAGGAAGA TTAGGCACGA GCAGGAAAAG AATAATTAGC GAGCGCCCGG
    GTGGTGTACC CATCTGTATT CATCATTTCC GCGATTCCAC CCTCTCTCTC
    TCTCTGCGGC CGCGCCATCT CTATCCGGGC TCAAGGGTGT GGCCGGGGGG
    CGACGAACGC CGCTCTCTCT GCCTTCCTCC TTGACCGATC GCTCCCTTCT
    GACCGTCTTA ATATTCTGGA AAGATCGGTT CTTGCCTTCT TGGGCTGCTT
    CAGGGGCGTG GGAGAGGTTT GGGGTTGGTT CATCTCGCGG GCTTGGGCGG
    CGGGAGGAGG AGAGGGGTTT TGCTTTGACT CCTGTTCCGA CTCTCCGGTT
    GATTCCTCCG ACTGAGTTCA GGGGGAGTTC TTCAATCAGG AAGGTCTTGA
    CTCTCGACGA GGAGTTCAAG GTTCTTGGAT TAAAGATTGG CAGTCATTCA
    TCGTGGATGG AGAATAGGAA CAAAGAAGAT ATGGGTCCAT CCCAGCGTAA
    TTCTTGCCCT AAGGTTCACA GCTCAATGTG CAGTGAGCTG ACAATGATGT
    TAGATAAAGT CTCCTCTATT CTTCCATTAA TTGAGGCAGC TCGACCAGGA
    TGTAAAGCAG GTATACAGGA ATTATGCAAC CTATACAATA TAGTTGAGAA
    AGGGAAACTC ATAATTCAGC ACTGCGTTGA ATGTAGCAAG CTCTACTTGG
    CTATTACTGG AGAGGCGATT GTATCTCGGT GTGAAAGGAT CAGAGACTCA
    CTTAGGCGGA GCTTGTTCCT GATTGAGAAC ATGGTCCCAC CAGCACTAGC
    TAATCAGATT GTTGACGTCC ATGATGATCT TGGGGACATA AAATTTGTTA
    TTGATCCCAC AGAAGAAGAG GCTGGCAAAA CCATTTTAGA GATGCTTCGG
    CAATCTGATG TGACTGAAGA ACTTGAACTT GAGACATTCC TGCAGGCAGC
    TTCAAACTTA AACCTGACAT CTCCTAAATC TATGCTAATT GAACGAAGGG
    CTATCAAGAA ACTGCTTGAC AAGATTAGCG GTACTGATCC CAAAAAGGAG
    GGAGTTCTTA AGTTCCTTCT ATACCTTGTT AAAAAGTATG GAAAAAACAT
    CAAACCAGAA ACTGGTGAGC GGAATGAAAA CATGCAATCT GAAAGCCAGT
    CTTCGACTCC AAGCTCAAGT TTTGTTAGTG ATACCAGCAC TCCTGGAAAG
    TGGTACACAC CCACAGACAT CCAGAGGAAT GAGGATCAGA CTAGTATGTC
    AGGAGCAGCC ACACCACCTG CAGAGTTCTG TTGCCCAATA TCAACAAAGT
    TAATGCGTGA TCCTGTCATA ATAACATCTG GGCAGACTTA TGAAAGAGAA
    AATATTGAGA GATGGTTTAG GGAGGGATAT GATACCTGTC CCAGGACACA
    TATAAAGCTA GAAAATTTCG CGATGATTCC AAATACTTGC ATGAGGGACC
    TCATTTTCAA TTGGTGCAAA GAGCATGGTT TCATAATCTC AGATATTCTC
    CCTCCATCCA AAAATGCATA CAGTTACTTG CCGGAGCAAT TGCATGGTTA
    CTCCATGTCA AGTCTGCACA ATGTTTCAGT ACCTCTAATT GCTGGAAAAG
    TCAGGGATTT TGTGATTGAC CATAGCACTT CATCTGTTGC ATTATCTGAG
    GCCAGTTATA TGTCAGATTC ATATCATGTG CGGGACATGG AGGAACCGAA
    AGATAGTTTT TCTCAGTTCT CTTGGAGTGC GGACTATCAA GAGTGTTTGT
    CTTTTCGCAA CTTCAACCAG GACAAGTTCC TAAGGTTCTT TTACGAGCTG
    TCGAAGCTCC CATTGGAACT CCAAGACAGG TCCATTGGTG ATTTGAAGAT
    CATTCTCAAT GAGGAAAATG AGGCTTCATG TGCTATGGTT TCCAATGGAT
    TTGTAGAGGC ATTCTTTGAT TTCTTAATGA ATGAAGATGG AAGCTACAGT
    ATGCAAGCTC AGAAAGTTGG ATTTCAGTTC TTTCGTGTTT TTCTTTCCAA
    TAGCAGGACT AATATTCTAC ACATGAATGA AGAAGCATTC CGTCTATTTG
    CATCCTTTAT TGATTCTGAG TTAAAAACCG AAGCTTTGCT GACACTTCAC
    GAGCTGGTTC AACACCTGAG TTGTCGACAA TCCCATTTGA TGGCCTCTAT
    TATCACTCCT TTATTGGAGT CTGAAGATGC CGAGGGTCTC AAGCTTTGCC
    TGAAGATTGT CTGCAATCTT TCATCTGATT CGGATGTAAA ACCATACCTA
    ATTTCACTGG GAATTGTCTC AAGATTGTCA CCCATTCTTT CTGAAGGAAC
    CTTTGCTGAG TGTTGCTTGG AGATTTTGCG GAACCTGTGT GATGTGGAAG
    AAGCCACAGT GCTTATTACA AAAACTGATC GATGCCTTGG TTCCGTTGCA
    GAATATCTGG ACACTGGAAG CCCTAAAGAA CGAGAGCATG CAGTGGTTAT
    CCTTTTAGCA GTATGTTCCC ATAGTTCTGA GGATTGTTTA CTTGTAATGA
    AGGAAGGTGT AATCCCTGCC CTTGTGGACT TGTCAGTAAA TGGAATTGAT
    GAAGCAAAAG GTTGTTCAAT GAAGCTACTT CATCTTCTCA GGGATCTGAG
    GCGAACCGAC CAGTTGAACA ACTCATGTTC ACAAGAAGTG GTTGTCACAG
    ATGTAGTGGA GGGTCCTCCT GACAGTTCAA TTCACAAGCA GCCAATACCA
    AAGTCATCTC GTTTTTTCCA AAGAAAGTTG AACATTTTCT CAAAGCCCCG
    GTCACTTACG CTATTCTGAA AACTGGTAAA GATCGATCTA GTAGTCCTTG
    TATATTTTAT AACACTAACA GTTCTTTTGT ATAGGGTGGT AGAGGCTGTA
    TTGTCCAAAG GAAATGCTTG ATGAGATGAT CTTTTTCATC CTCATGTATT
    CCAGTAGAGT TTGATAAACT ATTGTGATGC ATCTTGCAGA TTGCAGTTGT
    TTTGCATCTT GCTGCGTGTA AAAAGTAGGC TAGATATAGT TTTTGTATTT
    TTGTACTCTG CTGTAGTGCT GTTCCATTGA CAGCTGGAAA GCCTGAAAAC
    AAGGTTTTGT TTATCTTATC TGAAGTTCTG AAGAAAGCAG AACTGGTGAT
    CC

    Gene models with high sequence identity

    1. AT1G24330.1 [+] show detail - ARM repeat superfamily protein
      E-value: 1e-84; Score: 311.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam U box domain 3.6e-18
    HMMPfam KAP 7.9e-06
    Gene3D no description 7.9e-26
    Gene3D Armadillo-like helical 6.8e-11
    HMMPanther WDSAM1 PROTEIN 3.6e-11
    HMMSmart U box domain 2.7e-25
    superfamily Armadillo-type fold 9.3e-24
    superfamily RING/U-box 1.6e-09

    See the detailed result >

    AT1G24330.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G67530.2); Has 3064 Blast hits to 2955 proteins in 242 species: Archae - 0; Bacteria - 60; Metazoa - 394; Fungi - 149; Plants - 2167; Viruses - 3; Other Eukaryotes - 291 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR