K35339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35339

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35339

Determination of introduced cDNA(s)

  • J033063P17 - Rice Full-length cDNAs - Original: J033063P17

    full reading [+] show sequence

    Nucleotide sequence: J033063P17 - full reading 
    GGAGAGAGGA AGAGGAGTCT CGGGTGGTGG CGCCATCGGC GGTGGGACCC 
    GGGAGCCGCT ACGGGAGGCG TAGACGACGA CCGGGGAGGA GAAGAAGAAG 
    AAGAGGAAGA TTAGGCACGA GCAGGAAAAG AATAATTAGC GAGCGCCCGG 
    GTGGTGTACC CATCTGTATT CATCATTTCC GCGATTCCAC CCTCTCTCTC 
    TCTCTGCGGC CGCGCCATCT CTATCCGGGC TCAAGGGTGT GGCCGGGGGG 
    CGACGAACGC CGCTCTCTCT GCCTTCCTCC TTGACCGATC GCTCCCTTCT 
    GACCGTCTTA ATATTCTGGA AAGATCGGTT CTTGCCTTCT TGGGCTGCTT 
    CAGGGGCGTG GGAGAGGTTT GGGGTTGGTT CATCTCGCGG GCTTGGGCGG 
    CGGGAGGAGG AGAGGGGTTT TGCTTTGACT CCTGTTCCGA CTCTCCGGTT 
    GATTCCTCCG ACTGAGTTCA GGGGGAGTTC TTCAATCAGG AAGGTCTTGA 
    CTCTCGACGA GGAGTTCAAG GTTCTTGGAT TAAAGATTGG CAGTCATTCA 
    TCGTGGATGG AGAATAGGAA CAAAGAAGAT ATGGGTCCAT CCCAGCGTAA 
    TTCTTGCCCT AAGGTTCACA GCTCAATGTG CAGTGAGCTG ACAATGATGT 
    TAGATAAAGT CTCCTCTATT CTTCCATTAA TTGAGGCAGC TCGACCAGGA 
    TGTAAAGCAG GTATACAGGA ATTATGCAAC CTATACAATA TAGTTGAGAA 
    AGGGAAACTC ATAATTCAGC ACTGCGTTGA ATGTAGCAAG CTCTACTTGG 
    CTATTACTGG AGAGGCGATT GTATCTCGGT GTGAAAGGAT CAGAGACTCA 
    CTTAGGCGGA GCTTGTTCCT GATTGAGAAC ATGGTCCCAC CAGCACTAGC 
    TAATCAGATT GTTGACGTCC ATGATGATCT TGGGGACATA AAATTTGTTA 
    TTGATCCCAC AGAAGAAGAG GCTGGCAAAA CCATTTTAGA GATGCTTCGG 
    CAATCTGATG TGACTGAAGA ACTTGAACTT GAGACATTCC TGCAGGCAGC 
    TTCAAACTTA AACCTGACAT CTCCTAAATC TATGCTAATT GAACGAAGGG 
    CTATCAAGAA ACTGCTTGAC AAGATTAGCG GTACTGATCC CAAAAAGGAG 
    GGAGTTCTTA AGTTCCTTCT ATACCTTGTT AAAAAGTATG GAAAAAACAT 
    CAAACCAGAA ACTGGTGAGC GGAATGAAAA CATGCAATCT GAAAGCCAGT 
    CTTCGACTCC AAGCTCAAGT TTTGTTAGTG ATACCAGCAC TCCTGGAAAG 
    TGGTACACAC CCACAGACAT CCAGAGGAAT GAGGATCAGA CTAGTATGTC 
    AGGAGCAGCC ACACCACCTG CAGAGTTCTG TTGCCCAATA TCAACAAAGT 
    TAATGCGTGA TCCTGTCATA ATAACATCTG GGCAGACTTA TGAAAGAGAA 
    AATATTGAGA GATGGTTTAG GGAGGGATAT GATACCTGTC CCAGGACACA 
    TATAAAGCTA GAAAATTTCG CGATGATTCC AAATACTTGC ATGAGGGACC 
    TCATTTTCAA TTGGTGCAAA GAGCATGGTT TCATAATCTC AGATATTCTC 
    CCTCCATCCA AAAATGCATA CAGTTACTTG CCGGAGCAAT TGCATGGTTA 
    CTCCATGTCA AGTCTGCACA ATGTTTCAGT ACCTCTAATT GCTGGAAAAG 
    TCAGGGATTT TGTGATTGAC CATAGCACTT CATCTGTTGC ATTATCTGAG 
    GCCAGTTATA TGTCAGATTC ATATCATGTG CGGGACATGG AGGAACCGAA 
    AGATAGTTTT TCTCAGTTCT CTTGGAGTGC GGACTATCAA GAGTGTTTGT 
    CTTTTCGCAA CTTCAACCAG GACAAGTTCC TAAGGTTCTT TTACGAGCTG 
    TCGAAGCTCC CATTGGAACT CCAAGACAGG TCCATTGGTG ATTTGAAGAT 
    CATTCTCAAT GAGGAAAATG AGGCTTCATG TGCTATGGTT TCCAATGGAT 
    TTGTAGAGGC ATTCTTTGAT TTCTTAATGA ATGAAGATGG AAGCTACAGT 
    ATGCAAGCTC AGAAAGTTGG ATTTCAGTTC TTTCGTGTTT TTCTTTCCAA 
    TAGCAGGACT AATATTCTAC ACATGAATGA AGAAGCATTC CGTCTATTTG 
    CATCCTTTAT TGATTCTGAG TTAAAAACCG AAGCTTTGCT GACACTTCAC 
    GAGCTGGTTC AACACCTGAG TTGTCGACAA TCCCATTTGA TGGCCTCTAT 
    TATCACTCCT TTATTGGAGT CTGAAGATGC CGAGGGTCTC AAGCTTTGCC 
    TGAAGATTGT CTGCAATCTT TCATCTGATT CGGATGTAAA ACCATACCTA 
    ATTTCACTGG GAATTGTCTC AAGATTGTCA CCCATTCTTT CTGAAGGAAC 
    CTTTGCTGAG TGTTGCTTGG AGATTTTGCG GAACCTGTGT GATGTGGAAG 
    AAGCCACAGT GCTTATTACA AAAACTGATC GATGCCTTGG TTCCGTTGCA 
    GAATATCTGG ACACTGGAAG CCCTAAAGAA CGAGAGCATG CAGTGGTTAT 
    CCTTTTAGCA GTATGTTCCC ATAGTTCTGA GGATTGTTTA CTTGTAATGA 
    AGGAAGGTGT AATCCCTGCC CTTGTGGACT TGTCAGTAAA TGGAATTGAT 
    GAAGCAAAAG GTTGTTCAAT GAAGCTACTT CATCTTCTCA GGGATCTGAG 
    GCGAACCGAC CAGTTGAACA ACTCATGTTC ACAAGAAGTG GTTGTCACAG 
    ATGTAGTGGA GGGTCCTCCT GACAGTTCAA TTCACAAGCA GCCAATACCA 
    AAGTCATCTC GTTTTTTCCA AAGAAAGTTG AACATTTTCT CAAAGCCCCG 
    GTCACTTACG CTATTCTGAA AACTGGTAAA GATCGATCTA GTAGTCCTTG 
    TATATTTTAT AACACTAACA GTTCTTTTGT ATAGGGTGGT AGAGGCTGTA 
    TTGTCCAAAG GAAATGCTTG ATGAGATGAT CTTTTTCATC CTCATGTATT 
    CCAGTAGAGT TTGATAAACT ATTGTGATGC ATCTTGCAGA TTGCAGTTGT 
    TTTGCATCTT GCTGCGTGTA AAAAGTAGGC TAGATATAGT TTTTGTATTT 
    TTGTACTCTG CTGTAGTGCT GTTCCATTGA CAGCTGGAAA GCCTGAAAAC 
    AAGGTTTTGT TTATCTTATC TGAAGTTCTG AAGAAAGCAG AACTGGTGAT 
    CC

    Gene models with high sequence identity

    1. AT1G24330.1 [+] show detail - ARM repeat superfamily protein
      E-value: 1e-84; Score: 311.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam U box domain 3.6e-18
    HMMPfam KAP 7.9e-06
    Gene3D no description 7.9e-26
    Gene3D Armadillo-like helical 6.8e-11
    HMMPanther WDSAM1 PROTEIN 3.6e-11
    HMMSmart U box domain 2.7e-25
    superfamily Armadillo-type fold 9.3e-24
    superfamily RING/U-box 1.6e-09

    See the detailed result >

    AT1G24330.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G67530.2); Has 3064 Blast hits to 2955 proteins in 242 species: Archae - 0; Bacteria - 60; Metazoa - 394; Fungi - 149; Plants - 2167; Viruses - 3; Other Eukaryotes - 291 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR