K35401

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35401

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35401

Determination of introduced cDNA(s)

  • J033108L18 - Rice Full-length cDNAs - Original: J033108L18

    full reading [+] show sequence

    Nucleotide sequence: J033108L18 - full reading 
    GATTTGACGG AGGAGCGGAA GTGAACAACC GCGCCACGCC ATGGGGCGAA 
    GCGAGTCGGC GTCCGCAGGA TTTCCCTCTC CGCCCGTGCC CTAAACCGCT 
    CGCCGCCGGC GACGTTGCGC CCCCGACCGC GAGTGGGCCG GCGGCGATGT 
    CCGGCCCCGT CGTTCCCCTC GCCTGGACGG CTCAAGGGCC CTGCGAGCCC 
    TCCCCTGGCT CTGGCCCGCT CCCCGTTTCC GCCGCCGCTA GCGATCCGCC 
    GGCGCCCTCC TCGTCGGTGC CCGCCGGCGG TCGTGAGCCC TCCGCTAGCG 
    GGCTGCCCCC CGCGGTGACT CCTCAGCTTG GGGATCATGA TCAAGGTGGT 
    TTACCTAACT GTGTGCCAAA AGTGGGGATG ACCTTTAATT CAGAGAACGA 
    AGCTTATGAT TTCTACAACT CCTATGCTAG AAATGTTGGG TTTAGTATCC 
    GGAAGAACCA CGCAAATACT AGGGCGGATG GGAGTCTTTG CTCCAAATAT 
    TTCCTGTGCA GCAATGAAGG GCAGCCGGTG GCAAGCACTA CCCAGCCGGG 
    GTGGAAGAAA CGTTCTTCAA CAAGATCTGA TTGCAAGGCT CGTCTTCAGT 
    TCTATATTTC CCGAGAAGGT ATCTGGACAG TGCAGAAGGT TGAGCTCGAT 
    CATAAGCACT ATCTCGTAAG TCCTGATAAG TCACACATGT TAAGGTCCCA 
    GCGCCGTTTG ACACCGTCAT ATCAACAGAT AGTGAATGAA ATGCGGCAAG 
    AAGGTATTAC AGCAGCTGAT ATGCAAAGAG TATTTCGGCA ATGGTCCAGG 
    GGAGCTGAAA ATGTGCATCT TCTGAAGAAA GATACTCAGA GAAAGTACCT 
    CCAACCAAGT TATGCACAGA AATTGCTTGA GTATTTGAAG AACAAACAAA 
    CAGAAAATCC TTCATTTTTT TATGCAGTTC AGCTGAATGA TGATGGTCGA 
    ATAGCAAACT TCTTCTGGAC AGATTGTCAA GCTATTGTGG ATTATGCTTG 
    TTTTGGTGAT GTCGTGTCTT TTGATACAAC ATTTGAAACA AACAAGTTTG 
    AAATGCCGTT TGCTCCATTT GTGGGGACTA ACCATCACAA ACAACCCATT 
    TTGTTTGGAG CTTCGCTGAT ATATGATGAA TCTTCAGAGT CTTTCAATTG 
    GCTGTTTCAA ACCTTCCTTA CGGCAATGTC TGGGAAGCAA CCGGCAACAA 
    TTTTCACAGA TCCCTCTGCT GAAATAATAA AGTCTGTTAG GTTAGTGTTT 
    CCAAACTCAA GTCACCGCCT GTGTTTGCGG CATATCTGTC ATAATGCTGT 
    TAAGCATTTG AATCACGTAA TTTGCAACCA TCCAGAATTT CTATCTGATT 
    TTAAGAGACG TATCTATGAA GAAAGGTCTG TAACGTTCTT TGACTTGAAG 
    TGGAAGGAAT TGGTTAACGC ATATAATCTA GACGGCAATG ATTGGATGAA 
    TAATTTATAT GCAATGCGTG AAAAGTGGGC TGCTGTGTAT TCCCGTGACT 
    CATTTTACGC TGACATGATG ACAATCCAAA ATGCTGAAGG CACAAGTGAT 
    GCATTGAAGA ATTTTCGGAG GAAACTCTGC CTTCCAGAAT TCTTAGAGGA 
    GTATGAGAAG TGCATAACTA GTTTCCGCCA AAATGAACTA GAAGCAGATT 
    ATAATTCCCG TCAAACCAGT CCGGTTCCCT ATGTTCCTGA TTTGCCTATG 
    TTGAAGACGG CTGCTGAGTC CTATACAAGG AATTTGTATT CGCATTTTGA 
    AGAAGAATTC AAAAAATTGT TCACTCTGTC TTGTTCGTTG CTATCACAAG 
    ACAGAACAAT CAGTACTTAC AAATTGACAC CTTTAAATTC TGAAGAAGAA 
    GCATATGTTG TTTTTAATTC TGAGGATACA ACAGTATCAT GTTCTTGCAG 
    GATGTATGAG TGCACAGGTA TGCTATGCAA GCACGCGCTG CGAGTCCTTA 
    ACTACAGCAA TATTTTTACA TTCCCCTCAC ACTATGTTTA CAAAAGGTGG 
    ACAAAATATG CAAAAGCCGG ACTATTTGGC TGCAGAAACA ATTCCCAAAG 
    CGGCAATGGA AGTTCGATGT TAAGATGTGC GCGTATATCT CAAAAGATGC 
    ACTCAGTTGC TCTAAGATAT TCGATGTCAG AAAAGGCGCT TCAGTTTTTG 
    GAAAGTGGGG TAGATAAGTT GACATGTGAA GTAGAAAATT TACTTAGTCA 
    CATAAACTTA AATGGAAATG GAAATGATAC CGGTCAATCT TCTGGTTTTT 
    GCAATGGTGC AATGGCAGAA AGTTTAGGCC ATTCAGAATC AATGTACAGC 
    GAAGGGGCCT AACCGCCTAA CCTGCAAAAA TACTAGAAAA AAGTGTTCTC 
    AAGGAGGAAA ATGGAAATGC ACTGCTAGAA GGAGAGGCAC CTACAATCAA 
    CTGTTATTTT CTGTTTATGT TAAATTCAAA TCTCAGTTCT TAACTGTGTG 
    AGGCACTACT CCAAAAAGGA AAAAAAATTC AAAG

    Gene models with high sequence identity

    1. AT4G38180.1 [+] show detail - FAR1-related sequence 5
      E-value: 9e-107; Score: 385.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, SWIM-type 10.348
    HMMPfam MULE transposase, conserved domain 2.3e-20
    HMMPfam Transcription factor, FAR1-related 2.3e-18
    HMMPfam Zinc finger, SWIM-type 3.3e-05
    HMMSmart Zinc finger, PMZ-type 3.2e-05

    See the detailed result >

    AT4G38180.1

    Model type
    Protein coding
    Short Description
    FAR1-related sequence 5
    Computational Description
    FAR1-related sequence 5 (FRS5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 3 (TAIR:AT2G27110.2); Has 1793 Blast hits to 1580 proteins in 47 species: Archae - 2; Bacteria - 0; Metazoa - 4; Fungi - 136; Plants - 1646; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR