K35411

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35411

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35411

Determination of introduced cDNA(s)

  • J013099I21 - Rice Full-length cDNAs - Original: J013099I21

    full reading [+] show sequence

    Nucleotide sequence: J013099I21 - full reading 
    GGATTTTTCC ACATACTGCT CGCACGTTGC TCGTGCTTCG CTCGCCGCCA 
    ATGAGGCCGG GAGCCATGGC CGCCGCCGCC GCGAAGCTCC CGCGCCTCAC 
    CACCTCCGCC GCGCTCTTCC CGACCCCGAG GCCGTTCGGC TCCCCCAGGC 
    CCGCCAAAGC CAGGCCGATG CCGCCGCCGC CGCCCATCAC CATCTCCATG 
    GACCCTGCCG CCGTCGACCC GGCCCACCTC CAGGCGCTCA TGCTCGCCTG 
    CGCACACTCC TGCGCCATCC GCCCCTCGCC GCCCTCCGCC GCGGAGGACC 
    CCGTCGACCT CCGCAAGCTC CGCGTCGCGC TCGCGCACAG CTTCCTCGTC 
    GTGTCCGTCT TCTGCAGCGC GAGGTTCCTG GACGATGGGG ATGGGGGTGT 
    CGATGGCGAT GGCCGGCGGC GGCTGCTGGG CCTGGGGCTC GGGCTCGGGC 
    GGCGAGAGGA CCGGCGGCTC GTCGGATTTG GCCGGGCCGT CTCCGACGTC 
    GGGCTCACCG CGTCCGTCCA CGACGTCGTG TGACTAACAG GTACATCCGT 
    CACTACAGAG GAGAGGTATA GGCCGACAAA TTGTTGAGAG AATGACAAGA 
    GTACTCCATA ACAGAGGTAT ATTTGACATT TCCGCACTAT GTACAGAAAA 
    GGAGAGGCCC TTTTTTGAAG CATGTGGATT TGGGGACGAT GCAATGGGTT 
    CAACAACAAT GATGTACACG GGAAAGATGC ACAGATAGTA CACAATGATA 
    ATTGTCTCAA GGAAGATATT GACAGCTCCT CTGGTGGGTT AACAGTTGCT 
    GCTTGAATAT ATCACTGCCA GTAAAGGAAC AGCAGCCGGA GTAAATTATG 
    CAATCCTTTC TAGCTGGTTA GAAGAGAAAA TAACCAGAAG GATATGGCAA 
    AACTCATAGC ATACTAGTAT TTGTGAAGGA TAGCAGTACA TACCATGTTT 
    GATACCCCAG ACCAGCATCT GTATACTCTA CCACTGATTG TAAAAACTTT 
    GAGATGAGTG CTAAGATTTC ATTTACAAAC AAAGAATGAA GGAAGGAAAC 
    AAATACATCA AACAAGTTAT TGAATCTGCA GTGGAAATAG CAATTATCCT 
    TCAAGGCTT

    Gene models with high sequence identity

    1. AT4G19985.1 [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
      E-value: 3e-25; Score: 43.90

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Acyl-CoA N-acyltransferase 0.000000029
    ProfileScan GCN5-related N-acetyltransferase 9.757
    HMMPfam GCN5-related N-acetyltransferase 0.00000011

    See the detailed result >

    AT4G19985.1

    Model type
    Protein coding
    Short Description
    Acyl-CoA N-acyltransferases (NAT) superfamily protein
    Computational Description
    Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: N-terminal protein myristoylation, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: nuclear shuttle interacting (TAIR:AT1G32070.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR