K35411

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35411

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35411

Determination of introduced cDNA(s)

  • J013099I21 - Rice Full-length cDNAs - Original: J013099I21

    full reading [+] show sequence

    Nucleotide sequence: J013099I21 - full reading
    GGATTTTTCC ACATACTGCT CGCACGTTGC TCGTGCTTCG CTCGCCGCCA 
    ATGAGGCCGG GAGCCATGGC CGCCGCCGCC GCGAAGCTCC CGCGCCTCAC
    CACCTCCGCC GCGCTCTTCC CGACCCCGAG GCCGTTCGGC TCCCCCAGGC
    CCGCCAAAGC CAGGCCGATG CCGCCGCCGC CGCCCATCAC CATCTCCATG
    GACCCTGCCG CCGTCGACCC GGCCCACCTC CAGGCGCTCA TGCTCGCCTG
    CGCACACTCC TGCGCCATCC GCCCCTCGCC GCCCTCCGCC GCGGAGGACC
    CCGTCGACCT CCGCAAGCTC CGCGTCGCGC TCGCGCACAG CTTCCTCGTC
    GTGTCCGTCT TCTGCAGCGC GAGGTTCCTG GACGATGGGG ATGGGGGTGT
    CGATGGCGAT GGCCGGCGGC GGCTGCTGGG CCTGGGGCTC GGGCTCGGGC
    GGCGAGAGGA CCGGCGGCTC GTCGGATTTG GCCGGGCCGT CTCCGACGTC
    GGGCTCACCG CGTCCGTCCA CGACGTCGTG TGACTAACAG GTACATCCGT
    CACTACAGAG GAGAGGTATA GGCCGACAAA TTGTTGAGAG AATGACAAGA
    GTACTCCATA ACAGAGGTAT ATTTGACATT TCCGCACTAT GTACAGAAAA
    GGAGAGGCCC TTTTTTGAAG CATGTGGATT TGGGGACGAT GCAATGGGTT
    CAACAACAAT GATGTACACG GGAAAGATGC ACAGATAGTA CACAATGATA
    ATTGTCTCAA GGAAGATATT GACAGCTCCT CTGGTGGGTT AACAGTTGCT
    GCTTGAATAT ATCACTGCCA GTAAAGGAAC AGCAGCCGGA GTAAATTATG
    CAATCCTTTC TAGCTGGTTA GAAGAGAAAA TAACCAGAAG GATATGGCAA
    AACTCATAGC ATACTAGTAT TTGTGAAGGA TAGCAGTACA TACCATGTTT
    GATACCCCAG ACCAGCATCT GTATACTCTA CCACTGATTG TAAAAACTTT
    GAGATGAGTG CTAAGATTTC ATTTACAAAC AAAGAATGAA GGAAGGAAAC
    AAATACATCA AACAAGTTAT TGAATCTGCA GTGGAAATAG CAATTATCCT
    TCAAGGCTT

    Gene models with high sequence identity

    1. AT4G19985.1 [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
      E-value: 3e-25; Score: 43.90

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Acyl-CoA N-acyltransferase 2.9e-08
    ProfileScan GCN5-related N-acetyltransferase 9.757
    HMMPfam GCN5-related N-acetyltransferase 1.1e-07

    See the detailed result >

    AT4G19985.1

    Model type
    Protein coding
    Short Description
    Acyl-CoA N-acyltransferases (NAT) superfamily protein
    Computational Description
    Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: N-terminal protein myristoylation, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: nuclear shuttle interacting (TAIR:AT1G32070.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR