K35412

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35412

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35412

Determination of introduced cDNA(s)

  • J023012B21 - Rice Full-length cDNAs - Original: J023012B21

    full reading [+] show sequence

    Nucleotide sequence: J023012B21 - full reading 
    GACTTCTCCT CAGCTCGCTT TCCCCTTCAC CACTGCAACT TGCTCATCAC 
    CCACACACCA AGCAAGCACT CACTCTCTCT TGCTAGCTCT CTCCACCACA 
    AGAAGAAACT AGCTAGCCAA GAAACGGAGG ATCGATCGAG GTTCAGGATA 
    GAGATTATTA CATCGTCGTG GTCGTCGATC ATGGGGGATC ATCAGATGAT 
    GCACGCAGCT CCGGCGGCGA TGTACAACGG CGGCGGTGGT ACGACGAGCT 
    CTCATGGCGT GTGGTGGAGC AACGCGGTGG GGGTACCGGC GGCGGCGACG 
    TGCTCGACGA CGACGGAGCT CGCCGGGTAC ACCGCCTGGT CGTCGGCTCT 
    GGCCGCTGGA TACGATGGCA TGGTAGCTGA CAACGGCGGC AAGCAGGCGA 
    AGAGCACCAC CACGGCGTCG TCGGAGTCGC CCGGCAACAA CAGCTCGGTG 
    ACCTTCCAAG AGCCGGCGAG CATCCCCGAC CCGGCCGCCG TCGCCGCCGT 
    GCCGCAGCCG GGGCTCGCCG GCTTCACCGA CTGGACCCAG CCTTTCATGA 
    ACAACGGTGC TGGTCTGCAT GAGTTTCTGC AAGATGGCCA CCATGACATG 
    AGCGCGTCGA GCTTGATGAA TCACTCATCA AATAACCTAG CACTGCAGCA 
    AGCAGGTCAC CACCACGAGC TGCTGTCCAG CTTCGGCTCA GACCTGCTCT 
    TGTCGCCGAC GTCGCCGTAC GGCGGATTCC AGTCCTCGCT GCTGAGGAGC 
    CTCATGGAGC CGACGGCGAA GCAGCAGCAG CAGCAGCCGG CTTTGGCTGG 
    ACTCCAGCAG TATCATCAGT ACCAGCAGCA GATGGGACAC GCACCAGCAG 
    CTGCTGCCAA GTTCGCGCAG GCAGTTGGGG CCAGGGATTC ACTCCAGTTC 
    ACCAACGACG CGCCGTTCTG GAACCCTTCT GCCGGATTCG GCATGCCGGC 
    GGCTGTGGCG GTGGCGGCGG CGGCGGCGCA AGATCAAGCT AGCGTTCGCT 
    CTGCCAAACG CTCGTCGCCG GCGCCGCCGC GTGCGGCAGC AACCCTTGCA 
    TTAAAGACTG CTATGGAAGG AGTAGGGGAC TCTAGCTCAG TGATCACCAA 
    GAAGGAGACA GCGTTCAAGA AACCGAGACT CGAGACACCG TCGCCATTGC 
    CGACCTTCAA GGTTAGGAAG GAGAAGCTAG GGGACAGGAT CACAGCGCTC 
    CAACAACTAG TCTCTCCTTT TGGAAAGACG GATACCGCAT CGGTGCTCCA 
    TGAGACCATC GAGTACATCA AGTTCCTGCA CGACCAAGTT GGTGCTCTTA 
    GTGCTCCATA CTTGAAGAAC GGTGCCCATC AAGTGCCCCA CTTGAAGAAC 
    TCAAGTCCTG ACAAGTCCGA GCACGGCGAG ATATCACTGA AGGGCCGGGG 
    GCTTTGTCTG GTGCCGATAT CGAGCACGTT CGCCGTTGCC AGCGAGGTGC 
    CCGTCGAGCT GTGGACTCCA TTTGGTGCCA ACTTTATTAG GTAGAAGAAC 
    AAGTCCTGGA ACTGAAGAAC ACTGATCAGA AGCGTCAAAT TAACGATCGA 
    GTAGCTAGCT GCTAATATAG TCGCCTAGCT AGCACAAATC GAGATCTGAT 
    GTTTCTTGAT TGTATCTACG TACTAGTTGT ATGATGATAA TTTCGTAACC 
    CTAGTAGTAC TGATGCTGTG GCTGTAATCA GCAAAGCACT GAGCTAGTTA 
    GCTAGATGAA CCTTTGGAAT GAGTGCTTGA AGACTTGGAT TCATTCTTCA 
    GGTTCATCAC AGAATAAGGA ATCGGCTAGT TGAGAGGGGA CAGAATTATG 
    TACTGATCAT CATCAGGTTC TTATGATTGG TTGCTAGGTT GCATCGTATC 
    AATGAGTAGT TGCGGAAGAA TTTGTTATAG AATTGATGGT TCGATTCAAT 
    GGTGGATCAA TTAAGTAATG TAGCAGGTTT CTCTCTGTTG ATTGTACC

    Gene models with high sequence identity

    1. AT1G61660.3 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 8e-40; Score: 162.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G61660.3

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G20640.1).
    Link
    InterPro Scan - TAIR