K35416

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35416

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35416

Determination of introduced cDNA(s)

  • J033029N11 - Rice Full-length cDNAs - Original: J033029N11

    full reading [+] show sequence

    Nucleotide sequence: J033029N11 - full reading 
    GATGTTCGTT CCGGAATCCT CTCGACCGTC GGGAAACTTG AGCCTTCAGC 
    TTCCTCCTTC CTCCCCCATC GCCAATGGCA TCCCCTTCCC TCGCTGCAGC 
    AAATACACTT CGCGAGATCC TCCTCCTCCT CCTCCTCCCG CGTCGAAGCG 
    AAATCGAAGC ACACACTCCT CCTTTCACCT CCCCTTCACT TCTCCTCGCC 
    GCCCAAGGGA AGGGCAAAGG TGGGGGAATC TTAGCTTACA TAGGACCCAG 
    GGGGGCGTCA GCGTCGTCTC TGCTTCTCCT TGTCTTGTTT GCAGGAATTG 
    AGGGGAATTC TTTCTTTTTT CTTCGCTGGA TTTGGTTTGG TTGGTTCGCT 
    GCTGATATTG GTTGGACCGG ATGCGGCTCT ACTCATCTGC AGTCAATTTG 
    CGGCGACCTT CTAAACGTAC CATGTATTCC CAATCTAGTC AGTTTCATGG 
    AGGATTAACA CAGAGTTTGG GATTACGGAA GTGTTCACGC TCGCAGACAT 
    CCAGTTATAA TGTGAAGCTG GGTCTTGTCG ATTGTTCTCT ACATAGGAAT 
    ATAAAATCTT CTGACCGGCC TAGTCTGAGG TACTTTGTTA GCTTAGTGGG 
    TCGGCAGTTC CGTTGTGGAC TGTCAGGCAA AGAAGGTAGT TTAAATATGA 
    AGCTCGACAT GCCTTCCCGT GACAATTTCT CTAGTATGAG CTGGAAATGG 
    AGAGGTTTGC ATCAAAAAAT AGGAGGTACA ACCAGTGGAC TTTGCTTAGG 
    TTTTGCAGTT TCTGGAATAG CAAATGCTGA GGTTCCTGTG GAGATAAGCA 
    TCAGCAATTC AGCAGCATCT ACCAGTTCAA CTCATGGCAA AGAAGTCTAT 
    ACGGATTATT CAGTAACAGG GATTCCTGGA GATGGAAGAT GCTTATTCCG 
    CTCTGTGATT CATGGGGCAT GCATTAGGGC AGGAAGACCC ATACCAAATG 
    AAGATCTTCA GAGAAAGCTA GCTGACGAAT TGAGGGCAAT GGTTGCTGAT 
    GAATTTGTTA AGAGGCGGGA AGAATCGGAA TGGTTTATTG AGGGAGATTT 
    CGACACATAT GTGTCCCATA TTAGGCATCC ACATGTGTGG GGCGGTGAAC 
    CAGAATTATT CATGGCTTCA CATGTTCTTG AGATGCCAAT AACGGTTTAC 
    ATGCATGATG AAGATGCTGG TGGTTTAATA ACAATTGCTG AATATGGCCA 
    ACAATATGGA AAAGAAGATC CAATCCAAGT TCTATATGAT GGTTTTGCTC 
    ATTATGATGC TGTACAGATT CCAGCAAAAA AATGCTCCAG AGAGATGACT 
    TCTGAATTTT TGAAGTTTCA AGGTTCAAAT GGTAGGATTT GGTCTTAACC 
    CATTTCCTTC CTTTCCATGT ATTTGCAAGT ATCGAAGTTC TGGTGGTTGA 
    CATTGACAAT ATCGCGCCGG TGAGAGTGAA GACTAGCTGT GATCTAGACA 
    TTGCTTTTCT TGTTAAAAGA AGCAAAATCC ACCACTCTGA TCAACCTTGT 
    CTATATTCTT CAAATGGCTT TGTGTTCAGG ATCCAGGCAT AGATTCCTGA 
    ATCGAGATGG AAATAGATGA CAAGGCATAT GTTTCTCGAT GTGAATCTGC 
    TGAAAGAGCC GAAACTGAAT TGTTGTTATC CACACTCTAG TAATGCTTCT 
    GGTAAAACGT GAGACAAGGC AGCATAAGCT TATGGATGAT TGAATCCTGC 
    TTGGTTAGTT AATACACTGA TTGTAGGCAC ATGTAAGGGT GTAAGCCTGT 
    AACTTACTGC AATATCCTGC ATACTAATGT GATGACTATG AGACC

    Gene models with high sequence identity

    1. AT3G57810.3 [+] show detail - Cysteine proteinases superfamily protein
      E-value: 1e-64; Score: 244.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ovarian tumour, otubain 5.7e-22
    HMMPanther OTU DOMAIN CONTAINING PROTEIN 4.7e-14
    superfamily Cysteine proteinases 1.7e-18
    ProfileScan Ovarian tumour, otubain 14.085

    See the detailed result >

    AT3G57810.3

    Model type
    Protein coding
    Short Description
    Cysteine proteinases superfamily protein
    Computational Description
    Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G38025.1); Has 624 Blast hits to 624 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 54; Plants - 235; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR